miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 65593 0.73 0.997578
Target:  5'- cUCCUAAGGUGUUA---AUAAUGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUaacUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 106007 0.73 0.997441
Target:  5'- cUCCUAAGuuguucucaaugauGCuuuauGUCAUUGGUGAUGUGUg -3'
miRNA:   3'- -AGGAUUC--------------CG-----UAGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 161783 0.78 0.939523
Target:  5'- aCCUAAGGUGUCAUUGAUGAUa---- -3'
miRNA:   3'- aGGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 87015 0.89 0.476414
Target:  5'- cCCUAAGGUAUCAUUGAUAAcgcuuUGUGUUg -3'
miRNA:   3'- aGGAUUCCGUAGUAACUAUU-----ACACAA- -5'
28275 5' -44 NC_005902.1 + 149038 0.69 0.99996
Target:  5'- uUUCUAAGGCAUCAUcaaUGAUGcaaaAUGUu-- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUAU----UACAcaa -5'
28275 5' -44 NC_005902.1 + 15938 0.71 0.99964
Target:  5'- uUCCUGGGGUAUCAuuaauaacacUcuacaugucguUGAUGAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGU----------A-----------ACUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 116700 0.74 0.994313
Target:  5'- aCCUAAaGCAUUAUUGAUGAUGUu-- -3'
miRNA:   3'- aGGAUUcCGUAGUAACUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 26214 0.9 0.466117
Target:  5'- cUCCUAAGGCAUCAUUGAcGAUgGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUaUUA-CACAa -5'
28275 5' -44 NC_005902.1 + 67888 0.72 0.999104
Target:  5'- cUCUUAAGGCAUCAUcGAUAAUa---- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 104289 0.9 0.435943
Target:  5'- cUCUUAAGGCAUCAUUGAUGAcgGUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUa-CACAa -5'
28275 5' -44 NC_005902.1 + 71688 0.73 0.997096
Target:  5'- cUCCUAAcaCGUCAUUGAUGAUGcGUUg -3'
miRNA:   3'- -AGGAUUccGUAGUAACUAUUACaCAA- -5'
28275 5' -44 NC_005902.1 + 88737 0.73 0.997578
Target:  5'- -gUUAAGGCAUCAUUGAUAAUa---- -3'
miRNA:   3'- agGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 50421 0.75 0.986479
Target:  5'- uUCCUAAGGCAUCAUcGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 82004 0.78 0.949325
Target:  5'- aUCCUAAGGUGUUAUUGGUGAaaUGuUGUUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUU--AC-ACAA- -5'
28275 5' -44 NC_005902.1 + 16813 0.84 0.718451
Target:  5'- cUCCUAAGGCAUCAUUGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 81864 0.89 0.507953
Target:  5'- cUCCUAAGGCGUUAUUGAUGAUGcuuUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUAC---ACAa -5'
28275 5' -44 NC_005902.1 + 134943 0.68 0.999979
Target:  5'- --aUAGGGUuUCAUacaaUGAUAAUGUGUUa -3'
miRNA:   3'- aggAUUCCGuAGUA----ACUAUUACACAA- -5'
28275 5' -44 NC_005902.1 + 71430 0.69 0.999971
Target:  5'- aUUUAAGGCcUCAUUGGUGAcaGUGUa -3'
miRNA:   3'- aGGAUUCCGuAGUAACUAUUa-CACAa -5'
28275 5' -44 NC_005902.1 + 26329 0.7 0.999868
Target:  5'- cUCCUAAGGCAUCAUcaaUGAcgcuuuguauuguUGAUGa--- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACU-------------AUUACacaa -5'
28275 5' -44 NC_005902.1 + 27738 0.71 0.99964
Target:  5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.