miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 20227 1.08 0.051428
Target:  5'- cUCCUAAGGCAUCAUUGAUAAUGUGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUACACAA- -5'
28275 5' -44 NC_005902.1 + 83805 0.7 0.999832
Target:  5'- cUCCUAAGGCAUUA---AUGAUGUa-- -3'
miRNA:   3'- -AGGAUUCCGUAGUaacUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 48051 0.7 0.999719
Target:  5'- cUCCUAAGGCAUCGUcagcaAUAcuuUGUGUc -3'
miRNA:   3'- -AGGAUUCCGUAGUAac---UAUu--ACACAa -5'
28275 5' -44 NC_005902.1 + 28884 0.73 0.997578
Target:  5'- uUCCUAGGGCAUCAgcacUGucaGUGAUGaGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGUa---AC---UAUUACaCAA- -5'
28275 5' -44 NC_005902.1 + 134282 0.77 0.958008
Target:  5'- cUCCUAAGGCAUUAUUaacaAUGGUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAc---UAUUACACaa -5'
28275 5' -44 NC_005902.1 + 162473 0.69 0.999971
Target:  5'- uUCCUAAGGUGUUGUUGAUGGc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 66963 0.7 0.999872
Target:  5'- cUCUAca-CAUCGUUGAUGAUGUGUg -3'
miRNA:   3'- aGGAUuccGUAGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 15811 0.8 0.89402
Target:  5'- cUCCUAAGGCauuGuuaaugaugccccaUCAUUGAUAAUGUGUa -3'
miRNA:   3'- -AGGAUUCCG---U--------------AGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 103943 0.73 0.997578
Target:  5'- uUCUUAAaGCAUCAUUGAUGAuauUGUGa- -3'
miRNA:   3'- -AGGAUUcCGUAGUAACUAUU---ACACaa -5'
28275 5' -44 NC_005902.1 + 65593 0.73 0.997578
Target:  5'- cUCCUAAGGUGUUA---AUAAUGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUaacUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 169081 0.86 0.61813
Target:  5'- uUCUUAAGGCGUCGUUGAUGacaGUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAU---UACACaa -5'
28275 5' -44 NC_005902.1 + 11074 0.87 0.573398
Target:  5'- cUCCUAAGGCAUCAUUGAUGAUa---- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 1320 0.68 0.999985
Target:  5'- uUCCUAAGGUGUUGUUGAUAu------ -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUuacacaa -5'
28275 5' -44 NC_005902.1 + 130819 0.68 0.999979
Target:  5'- cUUCUAAGGCGUCAUcGAUAAcauuuUGUa-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUU-----ACAcaa -5'
28275 5' -44 NC_005902.1 + 27738 0.71 0.99964
Target:  5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5'
28275 5' -44 NC_005902.1 + 45019 0.75 0.989691
Target:  5'- aCUUAAGGCAgCAUUGAUGAUaaaGUGUc -3'
miRNA:   3'- aGGAUUCCGUaGUAACUAUUA---CACAa -5'
28275 5' -44 NC_005902.1 + 114749 0.77 0.972194
Target:  5'- cUCCcAAGGCAUCAUUGAUAAUcGUu-- -3'
miRNA:   3'- -AGGaUUCCGUAGUAACUAUUA-CAcaa -5'
28275 5' -44 NC_005902.1 + 81864 0.89 0.507953
Target:  5'- cUCCUAAGGCGUUAUUGAUGAUGcuuUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUAC---ACAa -5'
28275 5' -44 NC_005902.1 + 106007 0.73 0.997441
Target:  5'- cUCCUAAGuuguucucaaugauGCuuuauGUCAUUGGUGAUGUGUg -3'
miRNA:   3'- -AGGAUUC--------------CG-----UAGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 161956 0.72 0.998982
Target:  5'- cUCCUAAGGCAUCGuuaaUaacacauaguaucauUGAUGAUGUcGUa -3'
miRNA:   3'- -AGGAUUCCGUAGU----A---------------ACUAUUACA-CAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.