miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 49991 0.74 0.992273
Target:  5'- cUCCUAAGGCAUCAUcaAUAAUGcuuUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAacUAUUAC---ACAa -5'
28275 5' -44 NC_005902.1 + 50392 0.76 0.97512
Target:  5'- aCCUAAGGUAUCAUcaaUGAU-AUGUGa- -3'
miRNA:   3'- aGGAUUCCGUAGUA---ACUAuUACACaa -5'
28275 5' -44 NC_005902.1 + 50421 0.75 0.986479
Target:  5'- uUCCUAAGGCAUCAUcGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 53084 0.68 0.999989
Target:  5'- cUCUUAAGGUAUUGUUGAUGAcGUu-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUaCAcaa -5'
28275 5' -44 NC_005902.1 + 55001 0.67 0.999995
Target:  5'- cCCUAAGGCAUCAUUaAUAAc----- -3'
miRNA:   3'- aGGAUUCCGUAGUAAcUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 58397 0.67 0.999998
Target:  5'- cUCUAc-GCAUCAUUGAUGAugcuuUGUGUg -3'
miRNA:   3'- aGGAUucCGUAGUAACUAUU-----ACACAa -5'
28275 5' -44 NC_005902.1 + 58610 0.67 0.999998
Target:  5'- cUCUAc-GCAUCAUUGAUGAugcuuUGUGUg -3'
miRNA:   3'- aGGAUucCGUAGUAACUAUU-----ACACAa -5'
28275 5' -44 NC_005902.1 + 65593 0.73 0.997578
Target:  5'- cUCCUAAGGUGUUA---AUAAUGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUaacUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 66963 0.7 0.999872
Target:  5'- cUCUAca-CAUCGUUGAUGAUGUGUg -3'
miRNA:   3'- aGGAUuccGUAGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 67288 0.8 0.881267
Target:  5'- aUCCUAAGGUGUUGUugaUGAUAAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 67417 0.67 0.999996
Target:  5'- cUCCUAAGGCAUUGUUauUGAUGc--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcuAUUACacaa -5'
28275 5' -44 NC_005902.1 + 67667 0.7 0.999832
Target:  5'- cUUCUAAGGCAUCAUUGAc-------- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUauuacacaa -5'
28275 5' -44 NC_005902.1 + 67888 0.72 0.999104
Target:  5'- cUCUUAAGGCAUCAUcGAUAAUa---- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 71430 0.69 0.999971
Target:  5'- aUUUAAGGCcUCAUUGGUGAcaGUGUa -3'
miRNA:   3'- aGGAUUCCGuAGUAACUAUUa-CACAa -5'
28275 5' -44 NC_005902.1 + 71688 0.73 0.997096
Target:  5'- cUCCUAAcaCGUCAUUGAUGAUGcGUUg -3'
miRNA:   3'- -AGGAUUccGUAGUAACUAUUACaCAA- -5'
28275 5' -44 NC_005902.1 + 81864 0.89 0.507953
Target:  5'- cUCCUAAGGCGUUAUUGAUGAUGcuuUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUAC---ACAa -5'
28275 5' -44 NC_005902.1 + 82004 0.78 0.949325
Target:  5'- aUCCUAAGGUGUUAUUGGUGAaaUGuUGUUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUU--AC-ACAA- -5'
28275 5' -44 NC_005902.1 + 82621 0.68 0.999985
Target:  5'- cUCCUAAGaUAUUAUUGAUGugGUGUUa -3'
miRNA:   3'- -AGGAUUCcGUAGUAACUAUuaCACAA- -5'
28275 5' -44 NC_005902.1 + 83805 0.7 0.999832
Target:  5'- cUCCUAAGGCAUUA---AUGAUGUa-- -3'
miRNA:   3'- -AGGAUUCCGUAGUaacUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 83913 0.66 1
Target:  5'- aCCUuuuaacccaGCAUCAUUGAUAAUGUu-- -3'
miRNA:   3'- aGGAuuc------CGUAGUAACUAUUACAcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.