miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 138169 0.78 0.953804
Target:  5'- uUCCUAAGGCAUCAUUaAUAAUGc--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcUAUUACacaa -5'
28275 5' -44 NC_005902.1 + 137781 0.74 0.992273
Target:  5'- cUCCUAuGGCAUUAUUGAUAAcagcGUGg- -3'
miRNA:   3'- -AGGAUuCCGUAGUAACUAUUa---CACaa -5'
28275 5' -44 NC_005902.1 + 134943 0.68 0.999979
Target:  5'- --aUAGGGUuUCAUacaaUGAUAAUGUGUUa -3'
miRNA:   3'- aggAUUCCGuAGUA----ACUAUUACACAA- -5'
28275 5' -44 NC_005902.1 + 134282 0.77 0.958008
Target:  5'- cUCCUAAGGCAUUAUUaacaAUGGUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAc---UAUUACACaa -5'
28275 5' -44 NC_005902.1 + 130819 0.68 0.999979
Target:  5'- cUUCUAAGGCGUCAUcGAUAAcauuuUGUa-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUU-----ACAcaa -5'
28275 5' -44 NC_005902.1 + 125944 0.7 0.999719
Target:  5'- cUUCUAAGGCAUUGUUGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 123075 0.68 0.999992
Target:  5'- uUCCUAAGGCAUCAucaacaaUgcaaaacgucauUGAaAGUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGU-------A------------ACUaUUACACaa -5'
28275 5' -44 NC_005902.1 + 122658 0.66 0.999999
Target:  5'- uUCUUAAGGUAUCAUUaAUGAcacaaaGUGUUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcUAUUa-----CACAA- -5'
28275 5' -44 NC_005902.1 + 118956 0.7 0.999849
Target:  5'- cUCCUAAaGCAUUAUUGAUAAUacuaugucauuaaugGUGUg -3'
miRNA:   3'- -AGGAUUcCGUAGUAACUAUUA---------------CACAa -5'
28275 5' -44 NC_005902.1 + 118745 0.67 0.999998
Target:  5'- cUUUAAGGCAUCAUcGAUGAUaUGa- -3'
miRNA:   3'- aGGAUUCCGUAGUAaCUAUUAcACaa -5'
28275 5' -44 NC_005902.1 + 116700 0.74 0.994313
Target:  5'- aCCUAAaGCAUUAUUGAUGAUGUu-- -3'
miRNA:   3'- aGGAUUcCGUAGUAACUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 114749 0.77 0.972194
Target:  5'- cUCCcAAGGCAUCAUUGAUAAUcGUu-- -3'
miRNA:   3'- -AGGaUUCCGUAGUAACUAUUA-CAcaa -5'
28275 5' -44 NC_005902.1 + 110219 0.67 0.999998
Target:  5'- cUCCUAAGGUAUUAUcaAUAAugcuuUGUGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAacUAUU-----ACACAA- -5'
28275 5' -44 NC_005902.1 + 106314 0.71 0.999584
Target:  5'- cUCCUAAGGCAUCAuUaaugcaaagcaucguUGAUGacaGUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGU-A---------------ACUAU---UACACaa -5'
28275 5' -44 NC_005902.1 + 106007 0.73 0.997441
Target:  5'- cUCCUAAGuuguucucaaugauGCuuuauGUCAUUGGUGAUGUGUg -3'
miRNA:   3'- -AGGAUUC--------------CG-----UAGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 104289 0.9 0.435943
Target:  5'- cUCUUAAGGCAUCAUUGAUGAcgGUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUa-CACAa -5'
28275 5' -44 NC_005902.1 + 103943 0.73 0.997578
Target:  5'- uUCUUAAaGCAUCAUUGAUGAuauUGUGa- -3'
miRNA:   3'- -AGGAUUcCGUAGUAACUAUU---ACACaa -5'
28275 5' -44 NC_005902.1 + 101976 0.68 0.999989
Target:  5'- cUCCUAAauCGUCAUUGAUAAUGa--- -3'
miRNA:   3'- -AGGAUUccGUAGUAACUAUUACacaa -5'
28275 5' -44 NC_005902.1 + 100564 0.78 0.944565
Target:  5'- cUCUUAAGGCAUCAUUGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 99902 0.77 0.972194
Target:  5'- uUCCUAAGGCGUCAUcaacAAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUAacuaUUACACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.