miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 184473 0.69 0.999946
Target:  5'- aUgUGAaGCAUCAUUGAUGAUGaUGUg -3'
miRNA:   3'- aGgAUUcCGUAGUAACUAUUAC-ACAa -5'
28275 5' -44 NC_005902.1 + 175947 0.67 0.999998
Target:  5'- cUCCUAAGGUAUCAUcaacaaugcuuUGug---GUGUUg -3'
miRNA:   3'- -AGGAUUCCGUAGUA-----------ACuauuaCACAA- -5'
28275 5' -44 NC_005902.1 + 172905 0.74 0.993356
Target:  5'- cCCUAAGGCAUCAUUGAc-------- -3'
miRNA:   3'- aGGAUUCCGUAGUAACUauuacacaa -5'
28275 5' -44 NC_005902.1 + 169081 0.86 0.61813
Target:  5'- uUCUUAAGGCGUCGUUGAUGacaGUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAU---UACACaa -5'
28275 5' -44 NC_005902.1 + 168319 0.68 0.999988
Target:  5'- uUCCUAAGGCAUCAUcgcaac-GUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUAacuauuaCACaa -5'
28275 5' -44 NC_005902.1 + 167728 0.77 0.958008
Target:  5'- cUCCUAAGGCAUUAUuaaUGAUGAUGc--- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUAUUACacaa -5'
28275 5' -44 NC_005902.1 + 167546 0.75 0.988169
Target:  5'- uUCCUAAaGCAUCAUUGAUAAUaaUGUUg -3'
miRNA:   3'- -AGGAUUcCGUAGUAACUAUUAc-ACAA- -5'
28275 5' -44 NC_005902.1 + 162473 0.69 0.999971
Target:  5'- uUCCUAAGGUGUUGUUGAUGGc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 162128 0.72 0.999104
Target:  5'- cCCUAAGGUGUUAUUGAUGAcaguaUGggGUUa -3'
miRNA:   3'- aGGAUUCCGUAGUAACUAUU-----ACa-CAA- -5'
28275 5' -44 NC_005902.1 + 161956 0.72 0.998982
Target:  5'- cUCCUAAGGCAUCGuuaaUaacacauaguaucauUGAUGAUGUcGUa -3'
miRNA:   3'- -AGGAUUCCGUAGU----A---------------ACUAUUACA-CAa -5'
28275 5' -44 NC_005902.1 + 161783 0.78 0.939523
Target:  5'- aCCUAAGGUGUCAUUGAUGAUa---- -3'
miRNA:   3'- aGGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 156704 0.77 0.965614
Target:  5'- cUCUUAAGGCAUCAUcaAUGAUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGUAacUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 150145 0.67 0.999998
Target:  5'- aCCUAAGGUGUgGUUGAUGAc----- -3'
miRNA:   3'- aGGAUUCCGUAgUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 149493 0.87 0.5957
Target:  5'- aUCCUAAGGCAUCAUcGAUGAUGUc-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 149038 0.69 0.99996
Target:  5'- uUUCUAAGGCAUCAUcaaUGAUGcaaaAUGUu-- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUAU----UACAcaa -5'
28275 5' -44 NC_005902.1 + 148526 0.69 0.999927
Target:  5'- aCUUAAGGCAgUGUUGAUaaaGAUGUGg- -3'
miRNA:   3'- aGGAUUCCGUaGUAACUA---UUACACaa -5'
28275 5' -44 NC_005902.1 + 148421 0.84 0.740067
Target:  5'- uUCCUAAGGUAUUGUUGAUAAUGUu-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 144330 0.83 0.791907
Target:  5'- cUCCUAAGGCAUCAaUGAUAcaaaGUGUUg -3'
miRNA:   3'- -AGGAUUCCGUAGUaACUAUua--CACAA- -5'
28275 5' -44 NC_005902.1 + 143770 0.71 0.999279
Target:  5'- cUCCUAAGauGUCAUUGAcaaUGAUGUGg- -3'
miRNA:   3'- -AGGAUUCcgUAGUAACU---AUUACACaa -5'
28275 5' -44 NC_005902.1 + 142325 0.68 0.999989
Target:  5'- aCCUAAaGCAUCAUcgaUGAcAAUGUGg- -3'
miRNA:   3'- aGGAUUcCGUAGUA---ACUaUUACACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.