miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 11419 0.66 1
Target:  5'- cUCUUAAGGCAUCAUcaaUGAcauaaagcaucaacAAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUa-------------UUACACaa -5'
28275 5' -44 NC_005902.1 + 83913 0.66 1
Target:  5'- aCCUuuuaacccaGCAUCAUUGAUAAUGUu-- -3'
miRNA:   3'- aGGAuuc------CGUAGUAACUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 94665 0.66 0.999999
Target:  5'- cUCCUAAGGCAUUGUcuauaacacaaaauaUcacuagcGAUAAUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---------------A-------CUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 95881 0.66 1
Target:  5'- cUCCUAAGGCAUUAUcaacaacacuuUGUGUc -3'
miRNA:   3'- -AGGAUUCCGUAGUAacuauu-----ACACAa -5'
28275 5' -44 NC_005902.1 + 122658 0.66 0.999999
Target:  5'- uUCUUAAGGUAUCAUUaAUGAcacaaaGUGUUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcUAUUa-----CACAA- -5'
28275 5' -44 NC_005902.1 + 58610 0.67 0.999998
Target:  5'- cUCUAc-GCAUCAUUGAUGAugcuuUGUGUg -3'
miRNA:   3'- aGGAUucCGUAGUAACUAUU-----ACACAa -5'
28275 5' -44 NC_005902.1 + 55001 0.67 0.999995
Target:  5'- cCCUAAGGCAUCAUUaAUAAc----- -3'
miRNA:   3'- aGGAUUCCGUAGUAAcUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 175947 0.67 0.999998
Target:  5'- cUCCUAAGGUAUCAUcaacaaugcuuUGug---GUGUUg -3'
miRNA:   3'- -AGGAUUCCGUAGUA-----------ACuauuaCACAA- -5'
28275 5' -44 NC_005902.1 + 67417 0.67 0.999996
Target:  5'- cUCCUAAGGCAUUGUUauUGAUGc--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcuAUUACacaa -5'
28275 5' -44 NC_005902.1 + 118745 0.67 0.999998
Target:  5'- cUUUAAGGCAUCAUcGAUGAUaUGa- -3'
miRNA:   3'- aGGAUUCCGUAGUAaCUAUUAcACaa -5'
28275 5' -44 NC_005902.1 + 58397 0.67 0.999998
Target:  5'- cUCUAc-GCAUCAUUGAUGAugcuuUGUGUg -3'
miRNA:   3'- aGGAUucCGUAGUAACUAUU-----ACACAa -5'
28275 5' -44 NC_005902.1 + 16302 0.67 0.999998
Target:  5'- cUCCUAAGGCAUCAUUa---------- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcuauuacacaa -5'
28275 5' -44 NC_005902.1 + 110219 0.67 0.999998
Target:  5'- cUCCUAAGGUAUUAUcaAUAAugcuuUGUGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAacUAUU-----ACACAA- -5'
28275 5' -44 NC_005902.1 + 150145 0.67 0.999998
Target:  5'- aCCUAAGGUGUgGUUGAUGAc----- -3'
miRNA:   3'- aGGAUUCCGUAgUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 134943 0.68 0.999979
Target:  5'- --aUAGGGUuUCAUacaaUGAUAAUGUGUUa -3'
miRNA:   3'- aggAUUCCGuAGUA----ACUAUUACACAA- -5'
28275 5' -44 NC_005902.1 + 101976 0.68 0.999989
Target:  5'- cUCCUAAauCGUCAUUGAUAAUGa--- -3'
miRNA:   3'- -AGGAUUccGUAGUAACUAUUACacaa -5'
28275 5' -44 NC_005902.1 + 123075 0.68 0.999992
Target:  5'- uUCCUAAGGCAUCAucaacaaUgcaaaacgucauUGAaAGUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGU-------A------------ACUaUUACACaa -5'
28275 5' -44 NC_005902.1 + 94606 0.68 0.999979
Target:  5'- -aCUAAGGUAUUAUUGAUAAUa---- -3'
miRNA:   3'- agGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 82621 0.68 0.999985
Target:  5'- cUCCUAAGaUAUUAUUGAUGugGUGUUa -3'
miRNA:   3'- -AGGAUUCcGUAGUAACUAUuaCACAA- -5'
28275 5' -44 NC_005902.1 + 53084 0.68 0.999989
Target:  5'- cUCUUAAGGUAUUGUUGAUGAcGUu-- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUaCAcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.