miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 20227 1.08 0.051428
Target:  5'- cUCCUAAGGCAUCAUUGAUAAUGUGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUACACAA- -5'
28275 5' -44 NC_005902.1 + 49991 0.74 0.992273
Target:  5'- cUCCUAAGGCAUCAUcaAUAAUGcuuUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAacUAUUAC---ACAa -5'
28275 5' -44 NC_005902.1 + 71688 0.73 0.997096
Target:  5'- cUCCUAAcaCGUCAUUGAUGAUGcGUUg -3'
miRNA:   3'- -AGGAUUccGUAGUAACUAUUACaCAA- -5'
28275 5' -44 NC_005902.1 + 95881 0.66 1
Target:  5'- cUCCUAAGGCAUUAUcaacaacacuuUGUGUc -3'
miRNA:   3'- -AGGAUUCCGUAGUAacuauu-----ACACAa -5'
28275 5' -44 NC_005902.1 + 87015 0.89 0.476414
Target:  5'- cCCUAAGGUAUCAUUGAUAAcgcuuUGUGUUg -3'
miRNA:   3'- aGGAUUCCGUAGUAACUAUU-----ACACAA- -5'
28275 5' -44 NC_005902.1 + 81864 0.89 0.507953
Target:  5'- cUCCUAAGGCGUUAUUGAUGAUGcuuUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUAC---ACAa -5'
28275 5' -44 NC_005902.1 + 169081 0.86 0.61813
Target:  5'- uUCUUAAGGCGUCGUUGAUGacaGUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAU---UACACaa -5'
28275 5' -44 NC_005902.1 + 16813 0.84 0.718451
Target:  5'- cUCCUAAGGCAUCAUUGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 161783 0.78 0.939523
Target:  5'- aCCUAAGGUGUCAUUGAUGAUa---- -3'
miRNA:   3'- aGGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 45019 0.75 0.989691
Target:  5'- aCUUAAGGCAgCAUUGAUGAUaaaGUGUc -3'
miRNA:   3'- aGGAUUCCGUaGUAACUAUUA---CACAa -5'
28275 5' -44 NC_005902.1 + 134282 0.77 0.958008
Target:  5'- cUCCUAAGGCAUUAUUaacaAUGGUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAc---UAUUACACaa -5'
28275 5' -44 NC_005902.1 + 90498 0.8 0.910001
Target:  5'- cUCUUAAGGCAUCAUcgaUGAcGAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUaUUACACaa -5'
28275 5' -44 NC_005902.1 + 91076 1.02 0.113518
Target:  5'- cUCCUAAGGCAUUAUUGAUGAUGUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 114749 0.77 0.972194
Target:  5'- cUCCcAAGGCAUCAUUGAUAAUcGUu-- -3'
miRNA:   3'- -AGGaUUCCGUAGUAACUAUUA-CAcaa -5'
28275 5' -44 NC_005902.1 + 104289 0.9 0.435943
Target:  5'- cUCUUAAGGCAUCAUUGAUGAcgGUGUg -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUa-CACAa -5'
28275 5' -44 NC_005902.1 + 15811 0.8 0.89402
Target:  5'- cUCCUAAGGCauuGuuaaugaugccccaUCAUUGAUAAUGUGUa -3'
miRNA:   3'- -AGGAUUCCG---U--------------AGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 50421 0.75 0.986479
Target:  5'- uUCCUAAGGCAUCAUcGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 116700 0.74 0.994313
Target:  5'- aCCUAAaGCAUUAUUGAUGAUGUu-- -3'
miRNA:   3'- aGGAUUcCGUAGUAACUAUUACAcaa -5'
28275 5' -44 NC_005902.1 + 26214 0.9 0.466117
Target:  5'- cUCCUAAGGCAUCAUUGAcGAUgGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUaUUA-CACAa -5'
28275 5' -44 NC_005902.1 + 11074 0.87 0.573398
Target:  5'- cUCCUAAGGCAUCAUUGAUGAUa---- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUAcacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.