miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 5' -44 NC_005902.1 + 1320 0.68 0.999985
Target:  5'- uUCCUAAGGUGUUGUUGAUAu------ -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUuacacaa -5'
28275 5' -44 NC_005902.1 + 10700 0.81 0.865277
Target:  5'- uUCCUAAGGCAUUAUcGAUAAugcuuUGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUU-----ACACAa -5'
28275 5' -44 NC_005902.1 + 11074 0.87 0.573398
Target:  5'- cUCCUAAGGCAUCAUUGAUGAUa---- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUAcacaa -5'
28275 5' -44 NC_005902.1 + 11419 0.66 1
Target:  5'- cUCUUAAGGCAUCAUcaaUGAcauaaagcaucaacAAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACUa-------------UUACACaa -5'
28275 5' -44 NC_005902.1 + 15811 0.8 0.89402
Target:  5'- cUCCUAAGGCauuGuuaaugaugccccaUCAUUGAUAAUGUGUa -3'
miRNA:   3'- -AGGAUUCCG---U--------------AGUAACUAUUACACAa -5'
28275 5' -44 NC_005902.1 + 15938 0.71 0.99964
Target:  5'- uUCCUGGGGUAUCAuuaauaacacUcuacaugucguUGAUGAUGUGg- -3'
miRNA:   3'- -AGGAUUCCGUAGU----------A-----------ACUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 16302 0.67 0.999998
Target:  5'- cUCCUAAGGCAUCAUUa---------- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcuauuacacaa -5'
28275 5' -44 NC_005902.1 + 16813 0.84 0.718451
Target:  5'- cUCCUAAGGCAUCAUUGAUGAc----- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUacacaa -5'
28275 5' -44 NC_005902.1 + 20227 1.08 0.051428
Target:  5'- cUCCUAAGGCAUCAUUGAUAAUGUGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAUUACACAA- -5'
28275 5' -44 NC_005902.1 + 20408 0.92 0.361356
Target:  5'- cUCCUAAGGCAUCAUUGAUAacaAUGUGc- -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUAU---UACACaa -5'
28275 5' -44 NC_005902.1 + 26214 0.9 0.466117
Target:  5'- cUCCUAAGGCAUCAUUGAcGAUgGUGUa -3'
miRNA:   3'- -AGGAUUCCGUAGUAACUaUUA-CACAa -5'
28275 5' -44 NC_005902.1 + 26329 0.7 0.999868
Target:  5'- cUCCUAAGGCAUCAUcaaUGAcgcuuuguauuguUGAUGa--- -3'
miRNA:   3'- -AGGAUUCCGUAGUA---ACU-------------AUUACacaa -5'
28275 5' -44 NC_005902.1 + 27738 0.71 0.99964
Target:  5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5'
28275 5' -44 NC_005902.1 + 27841 0.71 0.99964
Target:  5'- cUCCUAAGGCAUCAUcGccGAUGg--- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCuaUUACacaa -5'
28275 5' -44 NC_005902.1 + 28884 0.73 0.997578
Target:  5'- uUCCUAGGGCAUCAgcacUGucaGUGAUGaGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGUa---AC---UAUUACaCAA- -5'
28275 5' -44 NC_005902.1 + 34995 0.84 0.718451
Target:  5'- cUCCUAAGGUAUCAUUaAUAAUGUGa- -3'
miRNA:   3'- -AGGAUUCCGUAGUAAcUAUUACACaa -5'
28275 5' -44 NC_005902.1 + 37561 0.79 0.916481
Target:  5'- cUCCUAAGGCAUCuc-GAUGAcgccuUGUGUUa -3'
miRNA:   3'- -AGGAUUCCGUAGuaaCUAUU-----ACACAA- -5'
28275 5' -44 NC_005902.1 + 45019 0.75 0.989691
Target:  5'- aCUUAAGGCAgCAUUGAUGAUaaaGUGUc -3'
miRNA:   3'- aGGAUUCCGUaGUAACUAUUA---CACAa -5'
28275 5' -44 NC_005902.1 + 48051 0.7 0.999719
Target:  5'- cUCCUAAGGCAUCGUcagcaAUAcuuUGUGUc -3'
miRNA:   3'- -AGGAUUCCGUAGUAac---UAUu--ACACAa -5'
28275 5' -44 NC_005902.1 + 48409 0.77 0.965614
Target:  5'- cUCCUAAGGCGUCAUcGAUGAUa---- -3'
miRNA:   3'- -AGGAUUCCGUAGUAaCUAUUAcacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.