Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28275 | 5' | -44 | NC_005902.1 | + | 48409 | 0.77 | 0.965614 |
Target: 5'- cUCCUAAGGCGUCAUcGAUGAUa---- -3' miRNA: 3'- -AGGAUUCCGUAGUAaCUAUUAcacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 156704 | 0.77 | 0.965614 |
Target: 5'- cUCUUAAGGCAUCAUcaAUGAUGUGa- -3' miRNA: 3'- -AGGAUUCCGUAGUAacUAUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 167728 | 0.77 | 0.958008 |
Target: 5'- cUCCUAAGGCAUUAUuaaUGAUGAUGc--- -3' miRNA: 3'- -AGGAUUCCGUAGUA---ACUAUUACacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 134282 | 0.77 | 0.958008 |
Target: 5'- cUCCUAAGGCAUUAUUaacaAUGGUGUGa- -3' miRNA: 3'- -AGGAUUCCGUAGUAAc---UAUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 138169 | 0.78 | 0.953804 |
Target: 5'- uUCCUAAGGCAUCAUUaAUAAUGc--- -3' miRNA: 3'- -AGGAUUCCGUAGUAAcUAUUACacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 82004 | 0.78 | 0.949325 |
Target: 5'- aUCCUAAGGUGUUAUUGGUGAaaUGuUGUUg -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUU--AC-ACAA- -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 100564 | 0.78 | 0.944565 |
Target: 5'- cUCUUAAGGCAUCAUUGAUGAc----- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUacacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 161783 | 0.78 | 0.939523 |
Target: 5'- aCCUAAGGUGUCAUUGAUGAUa---- -3' miRNA: 3'- aGGAUUCCGUAGUAACUAUUAcacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 37561 | 0.79 | 0.916481 |
Target: 5'- cUCCUAAGGCAUCuc-GAUGAcgccuUGUGUUa -3' miRNA: 3'- -AGGAUUCCGUAGuaaCUAUU-----ACACAA- -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 90498 | 0.8 | 0.910001 |
Target: 5'- cUCUUAAGGCAUCAUcgaUGAcGAUGUGg- -3' miRNA: 3'- -AGGAUUCCGUAGUA---ACUaUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 15811 | 0.8 | 0.89402 |
Target: 5'- cUCCUAAGGCauuGuuaaugaugccccaUCAUUGAUAAUGUGUa -3' miRNA: 3'- -AGGAUUCCG---U--------------AGUAACUAUUACACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 67288 | 0.8 | 0.881267 |
Target: 5'- aUCCUAAGGUGUUGUugaUGAUAAUGUGg- -3' miRNA: 3'- -AGGAUUCCGUAGUA---ACUAUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 10700 | 0.81 | 0.865277 |
Target: 5'- uUCCUAAGGCAUUAUcGAUAAugcuuUGUGUa -3' miRNA: 3'- -AGGAUUCCGUAGUAaCUAUU-----ACACAa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 144330 | 0.83 | 0.791907 |
Target: 5'- cUCCUAAGGCAUCAaUGAUAcaaaGUGUUg -3' miRNA: 3'- -AGGAUUCCGUAGUaACUAUua--CACAA- -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 148421 | 0.84 | 0.740067 |
Target: 5'- uUCCUAAGGUAUUGUUGAUAAUGUu-- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUACAcaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 16813 | 0.84 | 0.718451 |
Target: 5'- cUCCUAAGGCAUCAUUGAUGAc----- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUacacaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 34995 | 0.84 | 0.718451 |
Target: 5'- cUCCUAAGGUAUCAUUaAUAAUGUGa- -3' miRNA: 3'- -AGGAUUCCGUAGUAAcUAUUACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 169081 | 0.86 | 0.61813 |
Target: 5'- uUCUUAAGGCGUCGUUGAUGacaGUGUGg- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAU---UACACaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 149493 | 0.87 | 0.5957 |
Target: 5'- aUCCUAAGGCAUCAUcGAUGAUGUc-- -3' miRNA: 3'- -AGGAUUCCGUAGUAaCUAUUACAcaa -5' |
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28275 | 5' | -44 | NC_005902.1 | + | 11074 | 0.87 | 0.573398 |
Target: 5'- cUCCUAAGGCAUCAUUGAUGAUa---- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUAcacaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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