Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28275 | 5' | -44 | NC_005902.1 | + | 81864 | 0.89 | 0.507953 |
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Target: 5'- cUCCUAAGGCGUUAUUGAUGAUGcuuUGUg -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUAC---ACAa -5' |
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| 28275 | 5' | -44 | NC_005902.1 | + | 87015 | 0.89 | 0.476414 |
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Target: 5'- cCCUAAGGUAUCAUUGAUAAcgcuuUGUGUUg -3' miRNA: 3'- aGGAUUCCGUAGUAACUAUU-----ACACAA- -5' |
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| 28275 | 5' | -44 | NC_005902.1 | + | 26214 | 0.9 | 0.466117 |
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Target: 5'- cUCCUAAGGCAUCAUUGAcGAUgGUGUa -3' miRNA: 3'- -AGGAUUCCGUAGUAACUaUUA-CACAa -5' |
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| 28275 | 5' | -44 | NC_005902.1 | + | 104289 | 0.9 | 0.435943 |
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Target: 5'- cUCUUAAGGCAUCAUUGAUGAcgGUGUg -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUa-CACAa -5' |
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| 28275 | 5' | -44 | NC_005902.1 | + | 20408 | 0.92 | 0.361356 |
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Target: 5'- cUCCUAAGGCAUCAUUGAUAacaAUGUGc- -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAU---UACACaa -5' |
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| 28275 | 5' | -44 | NC_005902.1 | + | 91076 | 1.02 | 0.113518 |
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Target: 5'- cUCCUAAGGCAUUAUUGAUGAUGUGUg -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUACACAa -5' |
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| 28275 | 5' | -44 | NC_005902.1 | + | 20227 | 1.08 | 0.051428 |
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Target: 5'- cUCCUAAGGCAUCAUUGAUAAUGUGUUa -3' miRNA: 3'- -AGGAUUCCGUAGUAACUAUUACACAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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