Results 41 - 60 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 76065 | 0.78 | 0.850153 |
Target: 5'- aACCCUUUAAUACCUGAACUAUauacaaacgaGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 146187 | 0.78 | 0.850153 |
Target: 5'- aACCCUUUAACACUUAAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 76894 | 0.78 | 0.832726 |
Target: 5'- uACCCUUUAACACUUAAGCUAUaUAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 170829 | 0.78 | 0.850153 |
Target: 5'- aACUCUUUAACACCUAAGCUAUaUAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 48501 | 0.78 | 0.832726 |
Target: 5'- uACCCUUUAACACUUAAGCUAUaUAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 143275 | 0.78 | 0.841549 |
Target: 5'- uACCCUUUAACAUCUAAGCUAUaUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 170699 | 0.77 | 0.874567 |
Target: 5'- aACUCUUUAACACCUAAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 157040 | 0.77 | 0.874567 |
Target: 5'- aACUCUUUAACACCUAAGCUAUaUAUGa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 104415 | 0.77 | 0.896738 |
Target: 5'- uCCCUUUAACACCUAAGCUAUa---- -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 68523 | 0.77 | 0.896738 |
Target: 5'- aACCCUUUAACAUCUAAGCUAUaugcaaguaaGUAUAg -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 42105 | 0.77 | 0.889607 |
Target: 5'- aACCCUUUAACAUCUAAACUugcUGUAUu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGu--ACAUAu -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 40966 | 0.76 | 0.903604 |
Target: 5'- cACCCUUUAAUACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 169441 | 0.76 | 0.916526 |
Target: 5'- aACCCUUUAACACUUAAGCU--GUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGuaCAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 61619 | 0.76 | 0.92079 |
Target: 5'- aACCCUUUAACAUCUAAGCUAUauacaaaugauugaGUAUAg -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA--------------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 167396 | 0.76 | 0.916526 |
Target: 5'- aACCUUUUAACACCUAAGCUAUauacgcuuaaGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 71707 | 0.76 | 0.910201 |
Target: 5'- cCCCUUUAACACCUAGGCUAUa---- -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 150156 | 0.76 | 0.928353 |
Target: 5'- aACCCUUUAACACCUAAGgUGUGg--- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUgGUACauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 39519 | 0.76 | 0.916526 |
Target: 5'- uAUCCUUUAACACCUAAGCUAUauacaaacaaGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 134403 | 0.76 | 0.910201 |
Target: 5'- aACCCUUUAACAUCUAAGCUAUauacaaguaaGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 31040 | 0.76 | 0.922577 |
Target: 5'- aACCCUUUAACAUCUAAGCUAUauacaaacaagcGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUA------------CAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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