miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 29024 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 29346 0.8 0.765643
Target:  5'- aACCCUUUAAUACCUAAACUAUaUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 20365 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 75821 0.8 0.785657
Target:  5'- uACCCUUUAACACCUAAauuauauauACCGuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------UGGU--ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 97435 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 80988 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 128771 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 117070 0.79 0.795431
Target:  5'- aACCCUUUAACAUCUAAGCUauaugaacagGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG----------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 50440 0.79 0.823693
Target:  5'- aGCUCUUUAACACCUAAGCUAUaUAUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 7599 0.79 0.81446
Target:  5'- cACCCUUUAACACCUAAAUUAuauacucauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU----------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 54869 0.79 0.795431
Target:  5'- aACCCUUUAACACCUAAGCUAUu---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 142238 0.78 0.866669
Target:  5'- uACCUUUUAACACCUAAGCUAuauacacgcauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 76894 0.78 0.832726
Target:  5'- uACCCUUUAACACUUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 143275 0.78 0.841549
Target:  5'- uACCCUUUAACAUCUAAGCUAUaUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 75023 0.78 0.850153
Target:  5'- aACCUUUUAACACCUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 146187 0.78 0.850153
Target:  5'- aACCCUUUAACACUUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 170829 0.78 0.850153
Target:  5'- aACUCUUUAACACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 169788 0.78 0.841549
Target:  5'- uACCUUUUAACACCUAAACuauacacucgCAUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUG----------GUACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 154836 0.78 0.850153
Target:  5'- uACCCUUUAAUACCUAAGCUAUauacaaacaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 76065 0.78 0.850153
Target:  5'- aACCCUUUAAUACCUGAACUAUauacaaacgaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.