miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 21308 0.69 0.998707
Target:  5'- uACCUUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 23255 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 23464 0.72 0.985736
Target:  5'- aGCCCUUUAACACCUAAuCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUuGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 23499 0.68 0.999557
Target:  5'- uCCCUUUAACAUUUAAGCUAUaugcaaGUGUGa -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUA------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 23718 0.75 0.933853
Target:  5'- aACCCUUUAACACUUAAGCUAUauacaacugaGUAUGu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 26512 0.69 0.998707
Target:  5'- aAUCUUUUAAUACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 26745 0.7 0.995468
Target:  5'- aACCCUUUAACAUUUAAGCUAU-UAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 28024 0.74 0.95728
Target:  5'- aACCCUUUAAUGCCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 28133 0.72 0.983837
Target:  5'- aACCCUUUAAUACUUAAGCUAUauacaagugaGUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 28789 0.66 0.999945
Target:  5'- uAUCCUUUAACAUCUGuGCUcuuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuUGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 29024 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 29346 0.8 0.765643
Target:  5'- aACCCUUUAAUACCUAAACUAUaUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 29449 0.7 0.997714
Target:  5'- aACCCUUUAACACCcAAAUUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGaUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 29705 0.72 0.985736
Target:  5'- uACCCuUUUAACACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGG-AGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 29822 0.75 0.948714
Target:  5'- aACCUUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 30796 0.78 0.850153
Target:  5'- aACCCUUUAACAUCUAAGCUAuauacgcuuguuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 31040 0.76 0.922577
Target:  5'- aACCCUUUAACAUCUAAGCUAUauacaaacaagcGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA------------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 34813 0.71 0.993803
Target:  5'- aACCCUUUAACACCUAAGuuAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUAcauau -5'
28276 3' -46.5 NC_005902.1 + 36160 0.71 0.994688
Target:  5'- aACCCuUUUAACAUCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGG-AGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 37500 0.72 0.985736
Target:  5'- uAUCCUUUAACACUUAAGCUauaugaacggguAUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG------------UACAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.