miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 42105 0.77 0.889607
Target:  5'- aACCCUUUAACAUCUAAACUugcUGUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGu--ACAUAu -5'
28276 3' -46.5 NC_005902.1 + 167155 0.78 0.850153
Target:  5'- uCCCUUUAACACCUAAGCUAUauacuuaagcGUAUAu -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 99555 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 97174 0.84 0.571621
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 105941 0.75 0.948714
Target:  5'- aACCUUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 147589 0.76 0.928353
Target:  5'- aAUCCUgUAACACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAgAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 30796 0.78 0.850153
Target:  5'- aACCCUUUAACAUCUAAGCUAuauacgcuuguuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 50209 0.84 0.539352
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 55062 0.76 0.928353
Target:  5'- uACCCUUUAACACCUAAguucACU-UGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU----UGGuACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 50042 0.88 0.37288
Target:  5'- uACCCUUUAACACCUAAGCUAUGUu-- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUACAuau -5'
28276 3' -46.5 NC_005902.1 + 54049 0.78 0.850153
Target:  5'- uAUCCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 40966 0.76 0.903604
Target:  5'- cACCCUUUAAUACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 54869 0.79 0.795431
Target:  5'- aACCCUUUAACACCUAAGCUAUu---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 97435 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 13181 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 112069 0.84 0.582485
Target:  5'- uACCCUUUAACACCUAAAUCAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 169510 0.74 0.95728
Target:  5'- aACUCUUUAACACCUGAGCUAUaUAUc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 172604 0.75 0.948714
Target:  5'- aACCCUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 145944 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 50818 0.75 0.944032
Target:  5'- aACCCUUUAACAUCUAAACUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.