miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 39272 1.07 0.032208
Target:  5'- uACCCUCUAACACCUAAACCAUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 30796 0.78 0.850153
Target:  5'- aACCCUUUAACAUCUAAGCUAuauacgcuuguuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 167155 0.78 0.850153
Target:  5'- uCCCUUUAACACCUAAGCUAUauacuuaagcGUAUAu -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 114355 0.66 0.99997
Target:  5'- --aUUCUAACACCUAAGCUAUa---- -3'
miRNA:   3'- uggGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 112069 0.84 0.582485
Target:  5'- uACCCUUUAACACCUAAAUCAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 47234 0.83 0.601045
Target:  5'- aACCCUUUAACACCUAAGCUAuauacacacuccuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU--------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 13181 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 23255 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 97435 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 65751 0.78 0.832726
Target:  5'- aAUCCUUUAACACCUGAACUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 75821 0.8 0.785657
Target:  5'- uACCCUUUAACACCUAAauuauauauACCGuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU---------UGGU--ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 99555 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 50042 0.88 0.37288
Target:  5'- uACCCUUUAACACCUAAGCUAUGUu-- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUACAuau -5'
28276 3' -46.5 NC_005902.1 + 54869 0.79 0.795431
Target:  5'- aACCCUUUAACACCUAAGCUAUu---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 50209 0.84 0.539352
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 91856 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 7599 0.79 0.81446
Target:  5'- cACCCUUUAACACCUAAAUUAuauacucauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU----------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 54049 0.78 0.850153
Target:  5'- uAUCCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 97174 0.84 0.571621
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 48378 0.83 0.637251
Target:  5'- aACCCUUUAACACCUAAGuuAUGUAc- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUACAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.