Results 1 - 20 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 3' | -46.5 | NC_005902.1 | + | 26512 | 0.69 | 0.998707 |
Target: 5'- aAUCUUUUAAUACCUAAGCUAUaUAUAa -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 68320 | 0.67 | 0.999785 |
Target: 5'- uACCCUCUAcCACCUAAGuuAUa---- -3' miRNA: 3'- -UGGGAGAUuGUGGAUUUggUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 1516 | 0.68 | 0.999557 |
Target: 5'- cACCUUaggaauuaaucCUAACACCUGAGCUAUaUAUAc -3' miRNA: 3'- -UGGGA-----------GAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 142336 | 0.68 | 0.999557 |
Target: 5'- uACUCUUUAACACCUAAAgCAUc---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUgGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 23499 | 0.68 | 0.999557 |
Target: 5'- uCCCUUUAACAUUUAAGCUAUaugcaaGUGUGa -3' miRNA: 3'- uGGGAGAUUGUGGAUUUGGUA------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 127635 | 0.68 | 0.999444 |
Target: 5'- aACCCUUUAAgACUUAAGCUGUaUAUAa -3' miRNA: 3'- -UGGGAGAUUgUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 148484 | 0.68 | 0.999392 |
Target: 5'- uAUCUUUUAACACCUAAGCUugcuaugcuuauuUGUAUAu -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGu------------ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 174846 | 0.68 | 0.999307 |
Target: 5'- cACUCUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 114034 | 0.69 | 0.999141 |
Target: 5'- aAUCCgUUAACACCUAAACUAUaUAUAc -3' miRNA: 3'- -UGGGaGAUUGUGGAUUUGGUAcAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 63611 | 0.67 | 0.99982 |
Target: 5'- uACCuCUUUAACAUCUAAGCUAUauacaaacaagugaGUGUAu -3' miRNA: 3'- -UGG-GAGAUUGUGGAUUUGGUA--------------CAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 137848 | 0.67 | 0.999834 |
Target: 5'- aACCCUUUAACuCCUAAaguAUCAuugaUGUAUGa -3' miRNA: 3'- -UGGGAGAUUGuGGAUU---UGGU----ACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 75082 | 0.67 | 0.999834 |
Target: 5'- aACCCUUUAACuCCUAAugCGuUGUu-- -3' miRNA: 3'- -UGGGAGAUUGuGGAUUugGU-ACAuau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 92264 | 0.66 | 0.999926 |
Target: 5'- uACUUUUUaAACAUCUAAGCUAUGUAc- -3' miRNA: 3'- -UGGGAGA-UUGUGGAUUUGGUACAUau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 131124 | 0.66 | 0.999926 |
Target: 5'- uACCCUUUAAauCCUAAGCUauaaacaauuGUGUAUAu -3' miRNA: 3'- -UGGGAGAUUguGGAUUUGG----------UACAUAU- -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 131366 | 0.66 | 0.999926 |
Target: 5'- aACCCUU-AAUACCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGaUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 6442 | 0.66 | 0.999926 |
Target: 5'- aACCCUUUAACAaCUAAGCUAUa---- -3' miRNA: 3'- -UGGGAGAUUGUgGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 169363 | 0.66 | 0.999926 |
Target: 5'- -aCUUUUAACAUCUAAGCUAUGa--- -3' miRNA: 3'- ugGGAGAUUGUGGAUUUGGUACauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 169738 | 0.67 | 0.999903 |
Target: 5'- aACCCUgUAACACCUGAGauauauagcUCAgGUGUu -3' miRNA: 3'- -UGGGAgAUUGUGGAUUU---------GGUaCAUAu -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 134580 | 0.67 | 0.999903 |
Target: 5'- aACCCuUUUAACACUUAAGCUAUa---- -3' miRNA: 3'- -UGGG-AGAUUGUGGAUUUGGUAcauau -5' |
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28276 | 3' | -46.5 | NC_005902.1 | + | 91554 | 0.67 | 0.999872 |
Target: 5'- aACaaUCuUAAUACCUAAGCUAUGUAc- -3' miRNA: 3'- -UGggAG-AUUGUGGAUUUGGUACAUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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