miRNA display CGI


Results 1 - 20 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 1144 0.73 0.974285
Target:  5'- aACCCUUUAAgACCUAAGCU--GUAUAc -3'
miRNA:   3'- -UGGGAGAUUgUGGAUUUGGuaCAUAU- -5'
28276 3' -46.5 NC_005902.1 + 1260 0.69 0.998099
Target:  5'- aACUCUUcAACACCUAGGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGaUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 1391 0.82 0.670129
Target:  5'- aACCCUUUAACACCUAAGCU--GUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGuaCAUAU- -5'
28276 3' -46.5 NC_005902.1 + 1516 0.68 0.999557
Target:  5'- cACCUUaggaauuaaucCUAACACCUGAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGA-----------GAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 5632 0.72 0.984618
Target:  5'- aAUUCUUUAACACCUAAGCUuauaugaacaagcauGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG---------------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 6305 0.71 0.994604
Target:  5'- aACCCUUUAAUcuuuaagACCUAAGCCAUauacaaaugaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUG-------UGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 6442 0.66 0.999926
Target:  5'- aACCCUUUAACAaCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUgGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 7599 0.79 0.81446
Target:  5'- cACCCUUUAACACCUAAAUUAuauacucauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU----------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 7841 0.66 0.999945
Target:  5'- aACCUUUUAAUACUUAAACUAUauacaaaugaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 8413 0.7 0.996748
Target:  5'- cACUUUUUAACACCUAAACUAUauacaaaugaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 8663 0.73 0.971362
Target:  5'- aACCUUUUAACACCUAAACUAUu---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 10386 0.67 0.999785
Target:  5'- cCCCUUUAAUACUUAAACUAUa---- -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 10640 0.73 0.981752
Target:  5'- uACCCUUUAAUACgUAAGCCGUauacaaacaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGgAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 12541 0.73 0.976985
Target:  5'- aACCCUUUAAUACCUAAAUUAUauacaaacaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 13181 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 13437 0.84 0.582485
Target:  5'- uACCCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 16875 0.75 0.948714
Target:  5'- uAUCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 17129 0.81 0.734626
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 20365 0.8 0.745083
Target:  5'- uACCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 21167 0.74 0.961173
Target:  5'- uCCCUUUAACACUUAAGCUAUaUAUGa -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcAUAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.