miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 180882 0.67 0.999724
Target:  5'- aACCCUUUAACAUCUAAGCa------- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGguacauau -5'
28276 3' -46.5 NC_005902.1 + 177324 0.69 0.998428
Target:  5'- uAUCCUUUAACACCUAAGUUuauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 174846 0.68 0.999307
Target:  5'- cACUCUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 172604 0.75 0.948714
Target:  5'- aACCCUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 170847 0.68 0.999557
Target:  5'- uACCCUUUAACAUgUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGgAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 170829 0.78 0.850153
Target:  5'- aACUCUUUAACACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 170699 0.77 0.874567
Target:  5'- aACUCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 170531 0.78 0.850153
Target:  5'- aACCUUUUAACACCUAAACUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 169788 0.78 0.841549
Target:  5'- uACCUUUUAACACCUAAACuauacacucgCAUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUG----------GUACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 169738 0.67 0.999903
Target:  5'- aACCCUgUAACACCUGAGauauauagcUCAgGUGUu -3'
miRNA:   3'- -UGGGAgAUUGUGGAUUU---------GGUaCAUAu -5'
28276 3' -46.5 NC_005902.1 + 169510 0.74 0.95728
Target:  5'- aACUCUUUAACACCUGAGCUAUaUAUc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 169441 0.76 0.916526
Target:  5'- aACCCUUUAACACUUAAGCU--GUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGuaCAUAU- -5'
28276 3' -46.5 NC_005902.1 + 169363 0.66 0.999926
Target:  5'- -aCUUUUAACAUCUAAGCUAUGa--- -3'
miRNA:   3'- ugGGAGAUUGUGGAUUUGGUACauau -5'
28276 3' -46.5 NC_005902.1 + 168126 0.66 0.99997
Target:  5'- -aCCUCUAGCACCUuuAUCAc----- -3'
miRNA:   3'- ugGGAGAUUGUGGAuuUGGUacauau -5'
28276 3' -46.5 NC_005902.1 + 167503 0.71 0.994688
Target:  5'- uACCCUUUAACACCUAAGuuAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUAcauau -5'
28276 3' -46.5 NC_005902.1 + 167396 0.76 0.916526
Target:  5'- aACCUUUUAACACCUAAGCUAUauacgcuuaaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 167155 0.78 0.850153
Target:  5'- uCCCUUUAACACCUAAGCUAUauacuuaagcGUAUAu -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 166191 0.75 0.953129
Target:  5'- aACCCUUUAACACaUAAGCCAuauacaaacaagUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGgAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 166126 0.7 0.995468
Target:  5'- uACCCUUUAAUACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 165944 0.68 0.999444
Target:  5'- cACCUUUUAAUACUUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.