miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 75023 0.78 0.850153
Target:  5'- aACCUUUUAACACCUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 76065 0.78 0.850153
Target:  5'- aACCCUUUAAUACCUGAACUAUauacaaacgaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 154836 0.78 0.850153
Target:  5'- uACCCUUUAAUACCUAAGCUAUauacaaacaaGUGUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 146187 0.78 0.850153
Target:  5'- aACCCUUUAACACUUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 170829 0.78 0.850153
Target:  5'- aACUCUUUAACACCUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 142238 0.78 0.866669
Target:  5'- uACCUUUUAACACCUAAGCUAuauacacgcauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 170699 0.77 0.874567
Target:  5'- aACUCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 157040 0.77 0.874567
Target:  5'- aACUCUUUAACACCUAAGCUAUaUAUGa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 42105 0.77 0.889607
Target:  5'- aACCCUUUAACAUCUAAACUugcUGUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGu--ACAUAu -5'
28276 3' -46.5 NC_005902.1 + 104415 0.77 0.896738
Target:  5'- uCCCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 68523 0.77 0.896738
Target:  5'- aACCCUUUAACAUCUAAGCUAUaugcaaguaaGUAUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 40966 0.76 0.903604
Target:  5'- cACCCUUUAAUACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 71707 0.76 0.910201
Target:  5'- cCCCUUUAACACCUAGGCUAUa---- -3'
miRNA:   3'- uGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 134403 0.76 0.910201
Target:  5'- aACCCUUUAACAUCUAAGCUAUauacaaguaaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 169441 0.76 0.916526
Target:  5'- aACCCUUUAACACUUAAGCU--GUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGuaCAUAU- -5'
28276 3' -46.5 NC_005902.1 + 167396 0.76 0.916526
Target:  5'- aACCUUUUAACACCUAAGCUAUauacgcuuaaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 39519 0.76 0.916526
Target:  5'- uAUCCUUUAACACCUAAGCUAUauacaaacaaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 61619 0.76 0.92079
Target:  5'- aACCCUUUAACAUCUAAGCUAUauacaaaugauugaGUAUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA--------------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 31040 0.76 0.922577
Target:  5'- aACCCUUUAACAUCUAAGCUAUauacaaacaagcGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA------------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 150156 0.76 0.928353
Target:  5'- aACCCUUUAACACCUAAGgUGUGg--- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUgGUACauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.