miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 39095 0.74 0.961173
Target:  5'- aACUCUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 39272 1.07 0.032208
Target:  5'- uACCCUCUAACACCUAAACCAUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 39519 0.76 0.916526
Target:  5'- uAUCCUUUAACACCUAAGCUAUauacaaacaaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 40668 0.69 0.998943
Target:  5'- aACCCUUUAACGuuUAAGCUAUaUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUggAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 40966 0.76 0.903604
Target:  5'- cACCCUUUAAUACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 41207 0.73 0.971362
Target:  5'- uAUUCUUUAGCACCUAAGCUauaugugaGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG--------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 42105 0.77 0.889607
Target:  5'- aACCCUUUAACAUCUAAACUugcUGUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGu--ACAUAu -5'
28276 3' -46.5 NC_005902.1 + 42237 0.71 0.994688
Target:  5'- -aCCUCuUAACACCUAAGCUAUauacaaaugaGUAUAu -3'
miRNA:   3'- ugGGAG-AUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 42479 0.84 0.571621
Target:  5'- uACCCUUUAACACCUAAGCUAuauacucauuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU----------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 45077 0.75 0.953129
Target:  5'- uACCUUUUAACACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 47184 0.66 0.999945
Target:  5'- -aCCUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- ugGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 47234 0.83 0.601045
Target:  5'- aACCCUUUAACACCUAAGCUAuauacacacuccuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU--------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 48109 0.69 0.998099
Target:  5'- uACCCUUUAACAUUUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 48252 0.72 0.983837
Target:  5'- aAUCCUUUAACACUUAAGCUAUaUAUAc -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 48378 0.83 0.637251
Target:  5'- aACCCUUUAACACCUAAGuuAUGUAc- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUggUACAUau -5'
28276 3' -46.5 NC_005902.1 + 48501 0.78 0.832726
Target:  5'- uACCCUUUAACACUUAAGCUAUaUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5'
28276 3' -46.5 NC_005902.1 + 48821 0.75 0.948714
Target:  5'- aACCUUUUAACACCUAAACUAUaUAUu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAu -5'
28276 3' -46.5 NC_005902.1 + 50042 0.88 0.37288
Target:  5'- uACCCUUUAACACCUAAGCUAUGUu-- -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUACAuau -5'
28276 3' -46.5 NC_005902.1 + 50103 0.7 0.997266
Target:  5'- aACCCUuugaucCUAACACCUAAGCUAcauacuuacUGUGc- -3'
miRNA:   3'- -UGGGA------GAUUGUGGAUUUGGU---------ACAUau -5'
28276 3' -46.5 NC_005902.1 + 50209 0.84 0.539352
Target:  5'- aACCCUUUAACACCUAAGCUAUaUAUAg -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.