miRNA display CGI


Results 41 - 60 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 26301 0.69 0.999999
Target:  5'- -aUAUAUAGCUUAGGUaUUAAAaGAUu -3'
miRNA:   3'- acAUAUAUCGAAUCCAcAAUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 26468 0.67 1
Target:  5'- aGUAUAUAGCUaa-GUaUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAaucCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 26531 0.71 0.999966
Target:  5'- aGUAUAuaaUAGCUUAaaUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAU---AUCGAAUccACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 27812 0.84 0.845545
Target:  5'- uUGUAUAUAGCUUAGGcaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 27921 0.71 0.999988
Target:  5'- uUGUAUAUAGCUUAaGUaUUAAAGGu- -3'
miRNA:   3'- -ACAUAUAUCGAAUcCAcAAUUUCCua -5'
28276 5' -42.1 NC_005902.1 + 28812 1.06 0.108152
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 28961 0.76 0.994483
Target:  5'- aUGcUGUAUAGCUUAGGUGUUAAc---- -3'
miRNA:   3'- -AC-AUAUAUCGAAUCCACAAUUuccua -5'
28276 5' -42.1 NC_005902.1 + 29135 0.77 0.992456
Target:  5'- -aUAUAUAGUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 29187 0.85 0.807921
Target:  5'- uUGUGUAUAGCUUAGGUGUUAAc---- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUuccua -5'
28276 5' -42.1 NC_005902.1 + 29300 0.69 0.999999
Target:  5'- aGUAUAUAGCUUAaauaUUAAAGGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUccacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 29494 0.89 0.62228
Target:  5'- -aUAUAUAGCUUAGGUGUUaAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAA-UUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 29610 0.91 0.532147
Target:  5'- uUGUAUAUAGCUUAGGUGUUaAAAGGu- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAA-UUUCCua -5'
28276 5' -42.1 NC_005902.1 + 29659 0.76 0.997225
Target:  5'- -aUAUAUAaUUUGGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUcGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 30828 0.9 0.588139
Target:  5'- uUGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCcACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 31007 0.89 0.622279
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUCcACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 33185 0.79 0.980416
Target:  5'- aGUAUAUAGUUUAGGUGUUAAc---- -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUuccua -5'
28276 5' -42.1 NC_005902.1 + 34674 0.66 1
Target:  5'- aGUAUA-AGCuUUAGGauUUAAAGGAUa -3'
miRNA:   3'- aCAUAUaUCG-AAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 34757 0.78 0.982698
Target:  5'- -aUAUAUAGCUUAGGUGUUAAGa--- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 34921 0.73 0.999674
Target:  5'- -aUAUAUAGUaUAGGUGUuaaaagaaUAAAGGAUa -3'
miRNA:   3'- acAUAUAUCGaAUCCACA--------AUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 35024 0.89 0.633692
Target:  5'- aGUAUAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUcGAAUCCACAAUUUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.