miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 8444 0.73 0.999583
Target:  5'- aGUAUAucaaauaaUAGUUUAGGUGUuaaaagguUAAAGGAUu -3'
miRNA:   3'- aCAUAU--------AUCGAAUCCACA--------AUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 8625 0.78 0.988353
Target:  5'- uUGUAUAUAGUUUAGGUGUaaAAAGuGAa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAa-UUUC-CUa -5'
28276 5' -42.1 NC_005902.1 + 10428 0.68 1
Target:  5'- uUGUAUAcGGCUUAcGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUaUCGAAUcCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 10597 0.68 1
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- aCAUAUAUCGAAUcCAcAAUUUCCUa -5'
28276 5' -42.1 NC_005902.1 + 12753 0.71 0.999982
Target:  5'- uUGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUcGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 13226 0.98 0.25879
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 13393 1.04 0.128796
Target:  5'- gGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 16919 0.97 0.302844
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 17084 0.97 0.287547
Target:  5'- --gAUAUAGCUUAGGUGUUAAAGGAUa -3'
miRNA:   3'- acaUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 20153 1.06 0.099033
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 20325 0.8 0.961802
Target:  5'- -aUAUAUAGCUUAGGUGUUAAuaGAUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUucCUA- -5'
28276 5' -42.1 NC_005902.1 + 20494 0.84 0.845544
Target:  5'- aGUAUAUGuuaaCUUAGGUGUUAAAGGAUu -3'
miRNA:   3'- aCAUAUAUc---GAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 21377 0.8 0.953511
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGa -3'
miRNA:   3'- acAUAUAUCGAAUcCACAAUUUCCUa -5'
28276 5' -42.1 NC_005902.1 + 21520 0.79 0.980416
Target:  5'- aGUAUAUAGCUUAGaUGUUAaaagguaaAAGGAUa -3'
miRNA:   3'- aCAUAUAUCGAAUCcACAAU--------UUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 23287 0.71 0.999988
Target:  5'- uUGcAUAUAGCUUAaaUGUUAAAGGGa -3'
miRNA:   3'- -ACaUAUAUCGAAUccACAAUUUCCUa -5'
28276 5' -42.1 NC_005902.1 + 23466 0.97 0.302844
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 23506 0.9 0.576825
Target:  5'- uUGUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUcCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 23675 0.87 0.712889
Target:  5'- aGUAUAUAGaUUAGGUGUUAAAGGGc -3'
miRNA:   3'- aCAUAUAUCgAAUCCACAAUUUCCUa -5'
28276 5' -42.1 NC_005902.1 + 25161 0.75 0.997695
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAu--- -3'
miRNA:   3'- aCAUAUAUCGAAUCCaCAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 25328 0.66 1
Target:  5'- -aUAUAUAGCaUAGa-GUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGaAUCcaCAAUUUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.