miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 87226 0.66 1
Target:  5'- aGUAUAUAGCaUAaGUGUUAAAaGGUa -3'
miRNA:   3'- aCAUAUAUCGaAUcCACAAUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 170891 0.67 1
Target:  5'- aGUAUAUAGCUUAcaUGUUaAAAGGu- -3'
miRNA:   3'- aCAUAUAUCGAAUccACAA-UUUCCua -5'
28276 5' -42.1 NC_005902.1 + 131104 0.67 1
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUcCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 101227 0.67 1
Target:  5'- --cAUAUAGCUUAaGaGUUAAAGGGUu -3'
miRNA:   3'- acaUAUAUCGAAUcCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 181268 0.67 1
Target:  5'- uUGUAUAUAGCgUAGG-GUUAAAa--- -3'
miRNA:   3'- -ACAUAUAUCGaAUCCaCAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 163489 0.67 1
Target:  5'- --aGUAUAGcCUUAGGauUUAAAGGAUu -3'
miRNA:   3'- acaUAUAUC-GAAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 68492 0.67 1
Target:  5'- aGUAUA-GGCUUAGGaGUUAAAaGAUa -3'
miRNA:   3'- aCAUAUaUCGAAUCCaCAAUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 101340 0.67 1
Target:  5'- aGUAUAUAGCUUAaauauUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUccac-AAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 52547 0.67 1
Target:  5'- --aAUGUAGCgagugagUAuGUGUUAAAGGGUa -3'
miRNA:   3'- acaUAUAUCGa------AUcCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 26468 0.67 1
Target:  5'- aGUAUAUAGCUaa-GUaUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAaucCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 61732 0.67 1
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUcCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 136622 0.67 1
Target:  5'- -uUAUAUaAGcCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- acAUAUA-UC-GAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 147966 0.67 1
Target:  5'- aUGUGguUAUAGCUUAGaUGUUAAAGu-- -3'
miRNA:   3'- -ACAU--AUAUCGAAUCcACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 162798 0.67 1
Target:  5'- aGUAUAUAGCUUAGGUa--------- -3'
miRNA:   3'- aCAUAUAUCGAAUCCAcaauuuccua -5'
28276 5' -42.1 NC_005902.1 + 163657 0.67 1
Target:  5'- -uUAUAUAGcCUUAGGauUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUC-GAAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 40878 0.67 1
Target:  5'- -aUAUAUAGCUUAaacGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUccaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 95972 0.67 1
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- acAUAUAUCGAAUcCACAAUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 43941 0.67 1
Target:  5'- uUGUAUAUAGCUUAaa---UAAAGGAUa -3'
miRNA:   3'- -ACAUAUAUCGAAUccacaAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 45173 0.68 1
Target:  5'- aGUAUAcAGCUUAGaUGUUAAAGa-- -3'
miRNA:   3'- aCAUAUaUCGAAUCcACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 10597 0.68 1
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3'
miRNA:   3'- aCAUAUAUCGAAUcCAcAAUUUCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.