miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 153855 0.66 1
Target:  5'- cGUAUAUAGUUUAaGUGUUAAAu--- -3'
miRNA:   3'- aCAUAUAUCGAAUcCACAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 104301 0.66 1
Target:  5'- aGUAUAUAGCUUAag---UAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUccacaAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 52981 0.66 1
Target:  5'- -uUAUAUAaCUUAGGUGUUaAAAGGu- -3'
miRNA:   3'- acAUAUAUcGAAUCCACAA-UUUCCua -5'
28276 5' -42.1 NC_005902.1 + 91900 0.66 1
Target:  5'- aGUAUAUAGCUUAaa---UAAAGGAUa -3'
miRNA:   3'- aCAUAUAUCGAAUccacaAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 58411 0.66 1
Target:  5'- -aUAUAUAGCUUaaauaaAGG-GUUAAAGuGAUa -3'
miRNA:   3'- acAUAUAUCGAA------UCCaCAAUUUC-CUA- -5'
28276 5' -42.1 NC_005902.1 + 48419 0.66 1
Target:  5'- uUGUAUAUA-CUUAGGU---AAAGGGUu -3'
miRNA:   3'- -ACAUAUAUcGAAUCCAcaaUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 114386 0.66 1
Target:  5'- -aUAUAUAaCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUcGAAUcCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 34674 0.66 1
Target:  5'- aGUAUA-AGCuUUAGGauUUAAAGGAUa -3'
miRNA:   3'- aCAUAUaUCG-AAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 161736 0.66 1
Target:  5'- aGUGUAUGGCcUA-GUGUUAAAGa-- -3'
miRNA:   3'- aCAUAUAUCGaAUcCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 47146 0.66 1
Target:  5'- uUGcAUAUAGCUUAGGUaUUAAcAGGu- -3'
miRNA:   3'- -ACaUAUAUCGAAUCCAcAAUU-UCCua -5'
28276 5' -42.1 NC_005902.1 + 162929 0.66 1
Target:  5'- -aUAUGUAGCUUAGGUau--AAGGu- -3'
miRNA:   3'- acAUAUAUCGAAUCCAcaauUUCCua -5'
28276 5' -42.1 NC_005902.1 + 109112 0.66 1
Target:  5'- uUGUAUAUAGCcUAGcUGUUaAAAGGu- -3'
miRNA:   3'- -ACAUAUAUCGaAUCcACAA-UUUCCua -5'
28276 5' -42.1 NC_005902.1 + 25328 0.66 1
Target:  5'- -aUAUAUAGCaUAGa-GUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGaAUCcaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 100486 0.66 1
Target:  5'- aGUAUA-AGcCUUAGGauUUAAAGGAUa -3'
miRNA:   3'- aCAUAUaUC-GAAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 139953 0.66 1
Target:  5'- aGUAUA-AGcCUUAGGauUUAAAGGAUa -3'
miRNA:   3'- aCAUAUaUC-GAAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 184726 0.66 1
Target:  5'- aGUAUA-AGcCUUAGGauUUAAAGGAUa -3'
miRNA:   3'- aCAUAUaUC-GAAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 54192 0.66 1
Target:  5'- uUGUAUAUAGUUUAaaUGUUAGauuauAGGAUu -3'
miRNA:   3'- -ACAUAUAUCGAAUccACAAUU-----UCCUA- -5'
28276 5' -42.1 NC_005902.1 + 95521 0.66 1
Target:  5'- aGUGUAUugaauGUUaGGG-GUUAAAGGAUu -3'
miRNA:   3'- aCAUAUAu----CGAaUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 113811 0.66 1
Target:  5'- aGUAUAU-GCUUAGauaUUAAAGGAUa -3'
miRNA:   3'- aCAUAUAuCGAAUCcacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 174673 0.66 1
Target:  5'- aGUAUAUAGCUUAGaUGUaAAAaGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUCcACAaUUUcCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.