miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 39306 1.09 0.075848
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGAUa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 20153 1.06 0.099033
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 42267 1.06 0.101989
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 128983 1.06 0.101989
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 114438 1.06 0.101989
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 28812 1.06 0.108152
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 92069 1.06 0.108152
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 80777 1.06 0.108152
Target:  5'- gGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 47447 1.06 0.108152
Target:  5'- gUGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 99766 1.05 0.121538
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 55080 1.05 0.121538
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 13393 1.04 0.128796
Target:  5'- gGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 162599 1.04 0.136451
Target:  5'- aGUAUGUAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUa -5'
28276 5' -42.1 NC_005902.1 + 167365 1.04 0.136451
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUa -5'
28276 5' -42.1 NC_005902.1 + 54260 1 0.220112
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGAUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 13226 0.98 0.25879
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 104205 0.98 0.265752
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 17084 0.97 0.287547
Target:  5'- --gAUAUAGCUUAGGUGUUAAAGGAUa -3'
miRNA:   3'- acaUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 97648 0.97 0.295118
Target:  5'- aGUaaGUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCA--UAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 50420 0.97 0.302844
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.