Results 21 - 40 of 308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 5' | -42.1 | NC_005902.1 | + | 50420 | 0.97 | 0.302844 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 97385 | 0.97 | 0.302844 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 54378 | 0.97 | 0.302844 |
Target: 5'- -aUGUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 125576 | 0.97 | 0.302844 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 16919 | 0.97 | 0.302844 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 146639 | 0.95 | 0.361256 |
Target: 5'- aGUGaauUAUAGCUUAGGUGUUAAAGGAUu -3' miRNA: 3'- aCAU---AUAUCGAAUCCACAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 122804 | 0.95 | 0.370215 |
Target: 5'- aGUAUAUAGCUUAGGgGUUAAAGGGUa -3' miRNA: 3'- aCAUAUAUCGAAUCCaCAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 136087 | 0.95 | 0.370215 |
Target: 5'- uUGUAUAUAGCUUAGGaGUUAAAGGGUa -3' miRNA: 3'- -ACAUAUAUCGAAUCCaCAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 110137 | 0.94 | 0.39799 |
Target: 5'- uUGUAUAUAGCUUAGGUaUUAAAGGAUa -3' miRNA: 3'- -ACAUAUAUCGAAUCCAcAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 162433 | 0.94 | 0.40754 |
Target: 5'- gUGUGUAUAGCUUAGGUGUUAAAGa-- -3' miRNA: 3'- -ACAUAUAUCGAAUCCACAAUUUCcua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 67032 | 0.94 | 0.40754 |
Target: 5'- aGUAUAUAGCUUAGGaGUUAAAGGGUa -3' miRNA: 3'- aCAUAUAUCGAAUCCaCAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 52366 | 0.94 | 0.40754 |
Target: 5'- uUGUAUAUAGCUUAGGUGUUAAAGa-- -3' miRNA: 3'- -ACAUAUAUCGAAUCCACAAUUUCcua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 99650 | 0.94 | 0.40754 |
Target: 5'- uUGUAUAUAGCUUAGGUGUUAAAGa-- -3' miRNA: 3'- -ACAUAUAUCGAAUCCACAAUUUCcua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 39308 | 0.94 | 0.40754 |
Target: 5'- uUGUAUAUAGCUUAGGUGUUAAAGa-- -3' miRNA: 3'- -ACAUAUAUCGAAUCCACAAUUUCcua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 80945 | 0.94 | 0.40754 |
Target: 5'- uUGUAUAUAGCUUAGGUGUUAAAGa-- -3' miRNA: 3'- -ACAUAUAUCGAAUCCACAAUUUCcua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 50495 | 0.94 | 0.427066 |
Target: 5'- gUGUGUAucUAGUUUAGGUGUUAAAGGAUa -3' miRNA: 3'- -ACAUAU--AUCGAAUCCACAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 142364 | 0.93 | 0.447134 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGa-- -3' miRNA: 3'- aCAUAUAUCGAAUCCACAAUUUCcua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 41179 | 0.93 | 0.457363 |
Target: 5'- gUGUAUAUAGCUUAGGUaUUAAAGGGUg -3' miRNA: 3'- -ACAUAUAUCGAAUCCAcAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 154624 | 0.93 | 0.457364 |
Target: 5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUa -3' miRNA: 3'- -ACAUAUAUCGAAUCCAcAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 136256 | 0.93 | 0.467717 |
Target: 5'- aGUAUAUAGCUUAGGaGUUAAAGGGUu -3' miRNA: 3'- aCAUAUAUCGAAUCCaCAAUUUCCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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