miRNA display CGI


Results 21 - 40 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 39306 1.09 0.075848
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGAUa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 29494 0.89 0.62228
Target:  5'- -aUAUAUAGCUUAGGUGUUaAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAA-UUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 165978 0.9 0.610876
Target:  5'- uUGUAUAUGGCUUAuGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUcCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 142025 0.92 0.51027
Target:  5'- gUGUAUAUAGCUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 136087 0.95 0.370215
Target:  5'- uUGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 6346 0.85 0.797992
Target:  5'- -aUAUAUAGCUUAGGUuUUAAAGGAUa -3'
miRNA:   3'- acAUAUAUCGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 3477 0.88 0.690503
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 16919 0.97 0.302844
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 167185 0.9 0.565561
Target:  5'- cGUAUAUAGCUUAGGUGUUaAAAGGu- -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAA-UUUCCua -5'
28276 5' -42.1 NC_005902.1 + 167291 0.91 0.521164
Target:  5'- uUGUAUAUAaCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUAUcGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 13226 0.98 0.25879
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 80777 1.06 0.108152
Target:  5'- gGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 50229 0.85 0.807921
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 87103 0.85 0.797992
Target:  5'- -uUAUAUAGCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 134191 0.9 0.588139
Target:  5'- uUGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCcACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 67032 0.94 0.40754
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 110137 0.94 0.39799
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGAUa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 28812 1.06 0.108152
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 131154 0.91 0.521164
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 23506 0.9 0.576825
Target:  5'- uUGUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUcCACAAUUUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.