miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 39306 1.09 0.075848
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGAUa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 162433 0.94 0.40754
Target:  5'- gUGUGUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 154624 0.93 0.457364
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 87226 0.66 1
Target:  5'- aGUAUAUAGCaUAaGUGUUAAAaGGUa -3'
miRNA:   3'- aCAUAUAUCGaAUcCACAAUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 28812 1.06 0.108152
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 80777 1.06 0.108152
Target:  5'- gGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 104205 0.98 0.265752
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 16919 0.97 0.302844
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 122804 0.95 0.370215
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 99650 0.94 0.40754
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 110137 0.94 0.39799
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGAUa -3'
miRNA:   3'- -ACAUAUAUCGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 125576 0.97 0.302844
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 20153 1.06 0.099033
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 52366 0.94 0.40754
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 42267 1.06 0.101989
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 54378 0.97 0.302844
Target:  5'- -aUGUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 67032 0.94 0.40754
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 50495 0.94 0.427066
Target:  5'- gUGUGUAucUAGUUUAGGUGUUAAAGGAUa -3'
miRNA:   3'- -ACAUAU--AUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 114438 1.06 0.101989
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 13226 0.98 0.25879
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.