miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 1178 0.87 0.723961
Target:  5'- -aUAUAUacAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acAUAUA--UCGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 1294 0.75 0.998096
Target:  5'- -aUAUAUAGCUcAGGUGUU--AGGAUu -3'
miRNA:   3'- acAUAUAUCGAaUCCACAAuuUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 1357 0.82 0.927748
Target:  5'- uUGUAUAcAGCUUAGGUcUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUaUCGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 1411 0.7 0.999997
Target:  5'- uUGUAUAUAaCUUAGGUGUUAAc---- -3'
miRNA:   3'- -ACAUAUAUcGAAUCCACAAUUuccua -5'
28276 5' -42.1 NC_005902.1 + 1471 0.76 0.996678
Target:  5'- -aUAUAUAGCcUAGGUGUUGAAGa-- -3'
miRNA:   3'- acAUAUAUCGaAUCCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 3109 0.79 0.975187
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 3231 0.76 0.996309
Target:  5'- aGUAUAUAGCUUAGaUGUuaauauuuuaaaaacUGAAGGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUCcACA---------------AUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 3284 0.79 0.980416
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAu--- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 3477 0.88 0.690503
Target:  5'- uUGUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCACAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 3586 0.7 0.999996
Target:  5'- -aUGUAUAGCUUAGGUGUa------- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAauuuccua -5'
28276 5' -42.1 NC_005902.1 + 5422 0.85 0.807921
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 5690 0.83 0.894604
Target:  5'- uUGUAUAUAGCUUAGGgGUUAAAGa-- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCaCAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 5858 0.81 0.938935
Target:  5'- aGUAUAUAGCUUAauUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUccACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 6230 0.89 0.633692
Target:  5'- aGUAUAUAGCUUAGuUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUCcACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 6346 0.85 0.797992
Target:  5'- -aUAUAUAGCUUAGGUuUUAAAGGAUa -3'
miRNA:   3'- acAUAUAUCGAAUCCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 6525 0.81 0.948942
Target:  5'- uUGUAUAUGGCUUAGGUcuuaaagaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUAUCGAAUCCAc-------AAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 7677 0.7 0.999994
Target:  5'- uUGUAUAUAGCUUAGGU---AGAGu-- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCAcaaUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 7810 0.85 0.797992
Target:  5'- aGUAUAUAaUUUAGGUGUUAAAGGGUg -3'
miRNA:   3'- aCAUAUAUcGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 8212 0.69 0.999999
Target:  5'- uUGUAUAUAGCUUAGGcaaaGUUAAu---- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCa---CAAUUuccua -5'
28276 5' -42.1 NC_005902.1 + 8381 0.69 0.999999
Target:  5'- aGUAUAUAGCUUAaaUGUU--AGGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUccACAAuuUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.