miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 184799 0.76 0.996045
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGc-- -3'
miRNA:   3'- aCAUAUAUCGAAUcCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 184726 0.66 1
Target:  5'- aGUAUA-AGcCUUAGGauUUAAAGGAUa -3'
miRNA:   3'- aCAUAUaUC-GAAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 184631 0.8 0.969007
Target:  5'- cGUAUAUAGCUUAGGgGUUAaaAAGGu- -3'
miRNA:   3'- aCAUAUAUCGAAUCCaCAAU--UUCCua -5'
28276 5' -42.1 NC_005902.1 + 181436 0.71 0.999975
Target:  5'- aGUAUAUAaCUUAGGaGUUAAAGGc- -3'
miRNA:   3'- aCAUAUAUcGAAUCCaCAAUUUCCua -5'
28276 5' -42.1 NC_005902.1 + 181431 0.81 0.938935
Target:  5'- aGUAUAUcGCUUAGaUGUUAAAGGAUa -3'
miRNA:   3'- aCAUAUAuCGAAUCcACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 181268 0.67 1
Target:  5'- uUGUAUAUAGCgUAGG-GUUAAAa--- -3'
miRNA:   3'- -ACAUAUAUCGaAUCCaCAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 181096 0.7 0.999991
Target:  5'- uUGUgAUAUuGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- -ACA-UAUAuCGAAUCcACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 181035 0.75 0.998725
Target:  5'- aGUAUAUcGCUUAGGUGUU--AGGu- -3'
miRNA:   3'- aCAUAUAuCGAAUCCACAAuuUCCua -5'
28276 5' -42.1 NC_005902.1 + 177544 0.74 0.998967
Target:  5'- aUGcUAUAUAcaaauaaaCUUAGGUGUUAAAGGAUa -3'
miRNA:   3'- -AC-AUAUAUc-------GAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 175181 0.73 0.999805
Target:  5'- uUGUAUAUAGCUUAaGUGUUAGAa--- -3'
miRNA:   3'- -ACAUAUAUCGAAUcCACAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 174802 0.85 0.807921
Target:  5'- cGUAUAUAGCUUAGGUGUUAAcucGGu- -3'
miRNA:   3'- aCAUAUAUCGAAUCCACAAUUu--CCua -5'
28276 5' -42.1 NC_005902.1 + 174673 0.66 1
Target:  5'- aGUAUAUAGCUUAGaUGUaAAAaGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUCcACAaUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 173389 0.77 0.991242
Target:  5'- gUGUAUAUAaCUUAGGaGUUAAGGGGUu -3'
miRNA:   3'- -ACAUAUAUcGAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 173217 0.69 0.999999
Target:  5'- -aUAUAUAaCUUAGGaGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUcGAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 172815 0.89 0.622279
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUcCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 171060 0.84 0.845544
Target:  5'- uUGUAUAUAGCUUAcaUGUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUAUCGAAUccACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 170910 0.85 0.807921
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 170891 0.67 1
Target:  5'- aGUAUAUAGCUUAcaUGUUaAAAGGu- -3'
miRNA:   3'- aCAUAUAUCGAAUccACAA-UUUCCua -5'
28276 5' -42.1 NC_005902.1 + 170741 0.77 0.993533
Target:  5'- -aUAUAUAGUUUAGGUGUUaAAAGGu- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAA-UUUCCua -5'
28276 5' -42.1 NC_005902.1 + 170619 0.85 0.807921
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- acAUAUAUCGAAUCCACAAUUUCcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.