Results 21 - 40 of 308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28276 | 5' | -42.1 | NC_005902.1 | + | 131104 | 0.67 | 1 |
Target: 5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3' miRNA: 3'- acAUAUAUCGAAUcCAcAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 162929 | 0.66 | 1 |
Target: 5'- -aUAUGUAGCUUAGGUau--AAGGu- -3' miRNA: 3'- acAUAUAUCGAAUCCAcaauUUCCua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 25328 | 0.66 | 1 |
Target: 5'- -aUAUAUAGCaUAGa-GUUAAAGGGUa -3' miRNA: 3'- acAUAUAUCGaAUCcaCAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 100486 | 0.66 | 1 |
Target: 5'- aGUAUA-AGcCUUAGGauUUAAAGGAUa -3' miRNA: 3'- aCAUAUaUC-GAAUCCacAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 139953 | 0.66 | 1 |
Target: 5'- aGUAUA-AGcCUUAGGauUUAAAGGAUa -3' miRNA: 3'- aCAUAUaUC-GAAUCCacAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 184726 | 0.66 | 1 |
Target: 5'- aGUAUA-AGcCUUAGGauUUAAAGGAUa -3' miRNA: 3'- aCAUAUaUC-GAAUCCacAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 54192 | 0.66 | 1 |
Target: 5'- uUGUAUAUAGUUUAaaUGUUAGauuauAGGAUu -3' miRNA: 3'- -ACAUAUAUCGAAUccACAAUU-----UCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 95521 | 0.66 | 1 |
Target: 5'- aGUGUAUugaauGUUaGGG-GUUAAAGGAUu -3' miRNA: 3'- aCAUAUAu----CGAaUCCaCAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 113811 | 0.66 | 1 |
Target: 5'- aGUAUAU-GCUUAGauaUUAAAGGAUa -3' miRNA: 3'- aCAUAUAuCGAAUCcacAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 174673 | 0.66 | 1 |
Target: 5'- aGUAUAUAGCUUAGaUGUaAAAaGAUu -3' miRNA: 3'- aCAUAUAUCGAAUCcACAaUUUcCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 109112 | 0.66 | 1 |
Target: 5'- uUGUAUAUAGCcUAGcUGUUaAAAGGu- -3' miRNA: 3'- -ACAUAUAUCGaAUCcACAA-UUUCCua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 153855 | 0.66 | 1 |
Target: 5'- cGUAUAUAGUUUAaGUGUUAAAu--- -3' miRNA: 3'- aCAUAUAUCGAAUcCACAAUUUccua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 47146 | 0.66 | 1 |
Target: 5'- uUGcAUAUAGCUUAGGUaUUAAcAGGu- -3' miRNA: 3'- -ACaUAUAUCGAAUCCAcAAUU-UCCua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 104301 | 0.66 | 1 |
Target: 5'- aGUAUAUAGCUUAag---UAAAGGGUu -3' miRNA: 3'- aCAUAUAUCGAAUccacaAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 52981 | 0.66 | 1 |
Target: 5'- -uUAUAUAaCUUAGGUGUUaAAAGGu- -3' miRNA: 3'- acAUAUAUcGAAUCCACAA-UUUCCua -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 68492 | 0.67 | 1 |
Target: 5'- aGUAUA-GGCUUAGGaGUUAAAaGAUa -3' miRNA: 3'- aCAUAUaUCGAAUCCaCAAUUUcCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 101340 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUUAaauauUUAAAGGGUu -3' miRNA: 3'- aCAUAUAUCGAAUccac-AAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 52547 | 0.67 | 1 |
Target: 5'- --aAUGUAGCgagugagUAuGUGUUAAAGGGUa -3' miRNA: 3'- acaUAUAUCGa------AUcCACAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 26468 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUaa-GUaUUAAAGGGUa -3' miRNA: 3'- aCAUAUAUCGAaucCAcAAUUUCCUA- -5' |
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28276 | 5' | -42.1 | NC_005902.1 | + | 61732 | 0.67 | 1 |
Target: 5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3' miRNA: 3'- acAUAUAUCGAAUcCAcAAUUUCCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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