miRNA display CGI


Results 41 - 60 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 5' -42.1 NC_005902.1 + 68492 0.67 1
Target:  5'- aGUAUA-GGCUUAGGaGUUAAAaGAUa -3'
miRNA:   3'- aCAUAUaUCGAAUCCaCAAUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 163657 0.67 1
Target:  5'- -uUAUAUAGcCUUAGGauUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUC-GAAUCCacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 162798 0.67 1
Target:  5'- aGUAUAUAGCUUAGGUa--------- -3'
miRNA:   3'- aCAUAUAUCGAAUCCAcaauuuccua -5'
28276 5' -42.1 NC_005902.1 + 147966 0.67 1
Target:  5'- aUGUGguUAUAGCUUAGaUGUUAAAGu-- -3'
miRNA:   3'- -ACAU--AUAUCGAAUCcACAAUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 136622 0.67 1
Target:  5'- -uUAUAUaAGcCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- acAUAUA-UC-GAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 61732 0.67 1
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUCGAAUcCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 26468 0.67 1
Target:  5'- aGUAUAUAGCUaa-GUaUUAAAGGGUa -3'
miRNA:   3'- aCAUAUAUCGAaucCAcAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 52547 0.67 1
Target:  5'- --aAUGUAGCgagugagUAuGUGUUAAAGGGUa -3'
miRNA:   3'- acaUAUAUCGa------AUcCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 101340 0.67 1
Target:  5'- aGUAUAUAGCUUAaauauUUAAAGGGUu -3'
miRNA:   3'- aCAUAUAUCGAAUccac-AAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 26301 0.69 0.999999
Target:  5'- -aUAUAUAGCUUAGGUaUUAAAaGAUu -3'
miRNA:   3'- acAUAUAUCGAAUCCAcAAUUUcCUA- -5'
28276 5' -42.1 NC_005902.1 + 85373 0.69 0.999999
Target:  5'- -aUAUAUAGCUUAGauaUUAAAGGGUa -3'
miRNA:   3'- acAUAUAUCGAAUCcacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 8381 0.69 0.999999
Target:  5'- aGUAUAUAGCUUAaaUGUU--AGGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUccACAAuuUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 147633 0.69 0.999999
Target:  5'- aGUGUAUAGCUUAGaUGUUAAu---- -3'
miRNA:   3'- aCAUAUAUCGAAUCcACAAUUuccua -5'
28276 5' -42.1 NC_005902.1 + 47268 0.69 0.999999
Target:  5'- uUGUAUAUAGCUUAGauguuuGUGUUGAGa--- -3'
miRNA:   3'- -ACAUAUAUCGAAUC------CACAAUUUccua -5'
28276 5' -42.1 NC_005902.1 + 173217 0.69 0.999999
Target:  5'- -aUAUAUAaCUUAGGaGUUAAAGGGUu -3'
miRNA:   3'- acAUAUAUcGAAUCCaCAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 37174 0.69 0.999999
Target:  5'- aGUAUAUAGCUUAGGU---AAAGu-- -3'
miRNA:   3'- aCAUAUAUCGAAUCCAcaaUUUCcua -5'
28276 5' -42.1 NC_005902.1 + 156939 0.69 0.999999
Target:  5'- aGUAUAUGGUUUAGGUauuuGUUugcGGAa -3'
miRNA:   3'- aCAUAUAUCGAAUCCA----CAAuuuCCUa -5'
28276 5' -42.1 NC_005902.1 + 29300 0.69 0.999999
Target:  5'- aGUAUAUAGCUUAaauaUUAAAGGAUu -3'
miRNA:   3'- aCAUAUAUCGAAUccacAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 149952 0.69 0.999999
Target:  5'- --------cCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- acauauaucGAAUCCACAAUUUCCUA- -5'
28276 5' -42.1 NC_005902.1 + 8212 0.69 0.999999
Target:  5'- uUGUAUAUAGCUUAGGcaaaGUUAAu---- -3'
miRNA:   3'- -ACAUAUAUCGAAUCCa---CAAUUuccua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.