miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 149347 0.69 1
Target:  5'- uUUUAACUCCUAAGGcUAgUA-UAGUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUC-AUaAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 10793 0.69 1
Target:  5'- uUUUAACUUUUAAAGUAUcGUUggUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGuuAc -5'
28277 3' -36.1 NC_005902.1 + 166026 0.71 1
Target:  5'- -gUUAACUUCau-GGUGUUAUUGAUGa -3'
miRNA:   3'- gaAAUUGAGGauuUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 138176 0.71 1
Target:  5'- cCUUUAAUUCCUAAGGcAUcAUUAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 25429 0.71 1
Target:  5'- uUUUAACUCa--AGGcGUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGgauUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 42396 0.71 1
Target:  5'- gCUUUAACUCUuccaugcauUAAGGauguauuaaUAUUGUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG---------AUUUC---------AUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 79481 0.71 1
Target:  5'- cCUUUGACUCUUGAAGUucac-CAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAuaauaGUUAc -5'
28277 3' -36.1 NC_005902.1 + 88957 0.71 1
Target:  5'- -gUUAAUaCUgUAAGGUAUUAUCAAUGa -3'
miRNA:   3'- gaAAUUGaGG-AUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 99004 0.71 1
Target:  5'- uCUUUAACUCUgucauuaaugacaUAAAGcAUUGUUAGUGa -3'
miRNA:   3'- -GAAAUUGAGG-------------AUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 76113 0.71 1
Target:  5'- uCUUUAAUUCCaugu-UAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 68108 0.71 1
Target:  5'- cCUUUAACUCUa----UAUUAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 170985 0.71 1
Target:  5'- -gUUAACUCUgaauGUGUUGUUggUGa -3'
miRNA:   3'- gaAAUUGAGGauuuCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 143775 0.69 1
Target:  5'- -gUUAACUCCUAAGauGUcAUUGaCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUU--CA-UAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 33268 0.69 1
Target:  5'- -aUUAACUCa--AGGUAUcAUCGAUGa -3'
miRNA:   3'- gaAAUUGAGgauUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 167553 0.7 1
Target:  5'- cCUUUAAUUCCUAAAGc---AUCAuUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 181351 0.7 1
Target:  5'- cCUUUAACUCUcAAAGcAUUA-CAGUGa -3'
miRNA:   3'- -GAAAUUGAGGaUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 47294 0.7 1
Target:  5'- aUUUAACUCauaUcaucauugacaauauGAAGUAUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGg--A---------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 63468 0.7 1
Target:  5'- cCUUUuAUUCUUAAAGUAUcGUUGAUGu -3'
miRNA:   3'- -GAAAuUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 114990 0.7 1
Target:  5'- cCUUUAACUCUacaucgucaccgaUGAcauaacGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG-------------AUUu-----CAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 50392 0.7 1
Target:  5'- -------aCCUAAGGUAUcAUCAAUGa -3'
miRNA:   3'- gaaauugaGGAUUUCAUAaUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.