miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 35000 0.84 0.999706
Target:  5'- -gUUAACUCCUAAGGUAUcAUUAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 36556 0.67 1
Target:  5'- -cUUAAC-CCUAAGGgGUUAUCGu-- -3'
miRNA:   3'- gaAAUUGaGGAUUUCaUAAUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 37567 0.77 1
Target:  5'- uUUUAACUCCUAAGGcauc-UCGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCauaauAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 37678 0.81 0.999973
Target:  5'- uCUUUAACUCUUAAAGUAUcaUAaCAAUGu -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUA--AUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 39019 0.8 0.999996
Target:  5'- -aUUAACUUCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 39161 0.71 1
Target:  5'- -cUUAACUCCUAAAaaGUUGUUGAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUcaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 39266 0.76 1
Target:  5'- uUUUAACUUCUAAGGcAUUGUUAAUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 40738 0.74 1
Target:  5'- uUUUAACUCCaugc-UAUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 42048 0.68 1
Target:  5'- uUUUAACUUCUAAGGcAUUAUUGcUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 42396 0.71 1
Target:  5'- gCUUUAACUCUuccaugcauUAAGGauguauuaaUAUUGUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGG---------AUUUC---------AUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 43595 0.67 1
Target:  5'- ---aAACUCCUAAAaUGUcAUCGAUa -3'
miRNA:   3'- gaaaUUGAGGAUUUcAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 45257 0.73 1
Target:  5'- cCUUUAACUCCacac--AUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 47110 0.7 1
Target:  5'- -gUUAAUUCUUAAGGUAUUAaCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUaGUUac -5'
28277 3' -36.1 NC_005902.1 + 47294 0.7 1
Target:  5'- aUUUAACUCauaUcaucauugacaauauGAAGUAUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGg--A---------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 48047 0.71 1
Target:  5'- --aUAACUCCUAAGGcAUcGUCAGc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCaUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 48166 1.14 0.218375
Target:  5'- cCUUUAACUCCUAAAGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 48416 0.9 0.984172
Target:  5'- cCUUUAGCUCCUAAGGcGUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 49242 0.8 0.999998
Target:  5'- -cUUAACUCCUAGAGcuUUAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCauAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 49984 0.83 0.999775
Target:  5'- cCUUUAACUCCUAAGGcAUcAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 50392 0.7 1
Target:  5'- -------aCCUAAGGUAUcAUCAAUGa -3'
miRNA:   3'- gaaauugaGGAUUUCAUAaUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.