miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 16806 0.81 0.999986
Target:  5'- cCUUUAACUCCUAAGGcAUcAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 20057 0.7 1
Target:  5'- aUUUAACUCUUAAGaca-UGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUcauaAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 20222 0.69 1
Target:  5'- -gUUAACUCCUAAGGc---AUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 20413 0.69 1
Target:  5'- -gUUAACUCCUAAGGc---AUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 23599 0.68 1
Target:  5'- cCUUUAACUUUUAAAGcAUUGUUAu-- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 25070 0.84 0.999706
Target:  5'- cCUUUAACUCCUAAAGcGUUGUUGAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 25429 0.71 1
Target:  5'- uUUUAACUCa--AGGcGUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGgauUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26209 0.73 1
Target:  5'- -cUUAACUCCUAAGGcaucAUUGaCGAUGg -3'
miRNA:   3'- gaAAUUGAGGAUUUCa---UAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26324 0.83 0.999775
Target:  5'- -aUUAACUCCUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26431 0.86 0.998148
Target:  5'- cCUUUAAUUUCUAAGGcAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26677 0.66 1
Target:  5'- -aUUAACUCCaugc-UGUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 27731 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5'
28277 3' -36.1 NC_005902.1 + 27848 0.76 1
Target:  5'- uCUUUAACUCCUAAGGcAUcAUCGccgAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGU---UAC- -5'
28277 3' -36.1 NC_005902.1 + 28753 0.75 1
Target:  5'- --gUAAUUCCUAAAacAUUGUCAAUGa -3'
miRNA:   3'- gaaAUUGAGGAUUUcaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 28879 0.72 1
Target:  5'- -aUUAAUUCCUAGGGcAUcagcacUGUCAGUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUA------AUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 29526 0.75 1
Target:  5'- cCUUUAAUUCCac-GGUGUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 33259 1.03 0.600664
Target:  5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 33268 0.69 1
Target:  5'- -aUUAACUCa--AGGUAUcAUCGAUGa -3'
miRNA:   3'- gaAAUUGAGgauUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 33387 1.03 0.600664
Target:  5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 34909 0.67 1
Target:  5'- uUUUAACUCCa----UAUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.