miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 1315 0.86 0.998148
Target:  5'- -aUUAAUUCCUAAGGUGUUGUUGAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 4581 0.79 0.999999
Target:  5'- --aUGAUUCUUAAAGcAUUAUCAAUGa -3'
miRNA:   3'- gaaAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 5314 0.91 0.96729
Target:  5'- uUUUAACUUCUAAGGUGUcGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 5899 0.71 1
Target:  5'- uCUUUAACcCCUAagcuauauacaaauAAGUGUUGUgAAUGa -3'
miRNA:   3'- -GAAAUUGaGGAU--------------UUCAUAAUAgUUAC- -5'
28277 3' -36.1 NC_005902.1 + 6177 0.7 1
Target:  5'- uCUUUAACUCUUAAGGcAUUAUUu--- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGuuac -5'
28277 3' -36.1 NC_005902.1 + 7553 0.7 1
Target:  5'- cCUUUAACUCUaaacacauuAGUAUUAUUggUGu -3'
miRNA:   3'- -GAAAUUGAGGauu------UCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 8291 0.78 1
Target:  5'- -gUUAACUCUUGAGGUGcUGUUGAUGc -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUaAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 8346 0.82 0.999929
Target:  5'- -cUUAACUCCUAAAacAUUGUCGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 8529 0.66 1
Target:  5'- -aUUAAUUCCUAAAGcuucAUUGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 10706 0.83 0.999829
Target:  5'- uUUUAAUUCCUAAGGcAUUAUCGAUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 10733 0.73 1
Target:  5'- cCUUUAACUCUUAAGaUGUUGUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 10793 0.69 1
Target:  5'- uUUUAACUUUUAAAGUAUcGUUggUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGuuAc -5'
28277 3' -36.1 NC_005902.1 + 11068 0.77 1
Target:  5'- aUUUAACUCCUAAGGcAUcAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 11424 0.75 1
Target:  5'- -cUUAACUCUUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 11440 0.75 1
Target:  5'- uCUUUAAUUCUUAAaaAGUAUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGGAUU--UCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 11669 0.68 1
Target:  5'- uUUUAACUCC--AGGcGUUAUCAAc- -3'
miRNA:   3'- gAAAUUGAGGauUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 15804 0.94 0.909568
Target:  5'- cCUUUAACUCCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 15931 0.81 0.999973
Target:  5'- cCUUUAAUUCCUGGGGUAUcAUUAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 16179 0.75 1
Target:  5'- cCUUUAACUCCacaUcaucaacgacaauguAGAGUGUUAUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGG---A---------------UUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 16307 0.74 1
Target:  5'- -aUUAACUCCUAAGGcaucauUAUUAaCAAUGc -3'
miRNA:   3'- gaAAUUGAGGAUUUC------AUAAUaGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.