miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 184446 1 0.729205
Target:  5'- cCUUUAACUCUUAAGGUGUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 181707 0.86 0.997741
Target:  5'- cCUUUAACUUCUAAAGcAUUGUCGAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 181351 0.7 1
Target:  5'- cCUUUAACUCUcAAAGcAUUA-CAGUGa -3'
miRNA:   3'- -GAAAUUGAGGaUUUCaUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 181205 1.02 0.62423
Target:  5'- cCUUUAACUCCUAAAGcGUUGUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 181167 0.67 1
Target:  5'- -gUUAACUCCaaacgugccacUGAuagcaauaauGUGUUGUCAAUGa -3'
miRNA:   3'- gaAAUUGAGG-----------AUUu---------CAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 180755 0.9 0.976846
Target:  5'- -cUUAAUUCCUAAGGUGUUAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 176189 0.66 1
Target:  5'- cCUUUAACUCUgcgc-UGUUAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 175940 0.93 0.9457
Target:  5'- cCUUUAACUCCUAAGGUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 174933 0.66 1
Target:  5'- -aUUAACUCCUAAAa---UAUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcauaAUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 172666 0.72 1
Target:  5'- -gUUAACUCUagaUuaucauuaaugauguGAAGUGUUGUCAAUGa -3'
miRNA:   3'- gaAAUUGAGG---A---------------UUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 170985 0.71 1
Target:  5'- -gUUAACUCUgaauGUGUUGUUggUGa -3'
miRNA:   3'- gaAAUUGAGGauuuCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 169669 0.79 0.999999
Target:  5'- uUUUAACUCUUAAGGcGUcAUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 168313 0.67 1
Target:  5'- aUUUAAUUCCUAAGGcAUcAUCGcaacGUGg -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAaUAGU----UAC- -5'
28277 3' -36.1 NC_005902.1 + 167735 0.94 0.916383
Target:  5'- gCUUUAACUCCUAAGGcAUUAUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 167553 0.7 1
Target:  5'- cCUUUAAUUCCUAAAGc---AUCAuUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 167484 0.66 1
Target:  5'- uCUUUAAUUCUauac-UGUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 167209 0.72 1
Target:  5'- -gUUAACUCCUAAGGcAUUGUUu--- -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGuuac -5'
28277 3' -36.1 NC_005902.1 + 166026 0.71 1
Target:  5'- -gUUAACUUCau-GGUGUUAUUGAUGa -3'
miRNA:   3'- gaAAUUGAGGauuUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 165881 0.78 1
Target:  5'- cCUUUAACUUCUAAGGUGUcAUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 163811 0.84 0.999513
Target:  5'- -cUUAACUCCUAAAGUGUcAUUAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.