miRNA display CGI


Results 1 - 20 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 8529 0.66 1
Target:  5'- -aUUAAUUCCUAAAGcuucAUUGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 174933 0.66 1
Target:  5'- -aUUAACUCCUAAAa---UAUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcauaAUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 111037 0.66 1
Target:  5'- -gUUAACUUCUAAAaUAUcAUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 143929 0.66 1
Target:  5'- cCUUUAAUUCUUAAAacugaaagAUUGUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUca------UAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 167484 0.66 1
Target:  5'- uCUUUAAUUCUauac-UGUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84067 0.66 1
Target:  5'- cCUUUAACUCUgcac-UAUcAUCAAUGg -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 92085 0.66 1
Target:  5'- uUUUAACUCUgcgu-UGUUGUCAAUa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 73625 0.66 1
Target:  5'- cCUUUAACUCUUAA---GUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUucaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 125703 0.66 1
Target:  5'- gCUUUAACUUCacauc-AUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGauuucaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 137561 0.66 1
Target:  5'- -aUUAACUCCacgc-UGUUAUCAAUa -3'
miRNA:   3'- gaAAUUGAGGauuucAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 82105 0.66 1
Target:  5'- uUUUAACUCCaugu-UGUUAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 114794 0.66 1
Target:  5'- cCUUUAACUCUUAAAGc---AUCAc-- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCauaaUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 154904 0.66 1
Target:  5'- cCUUUAACUCCaaacaUcaucaauaacauGAAGUAUUGUUGAUa -3'
miRNA:   3'- -GAAAUUGAGG-----A------------UUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 26677 0.66 1
Target:  5'- -aUUAACUCCaugc-UGUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGauuucAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 85654 0.66 1
Target:  5'- uUUUAACUUUUAuGGUAUcAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUuUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 176189 0.66 1
Target:  5'- cCUUUAACUCUgcgc-UGUUAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGauuucAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 143953 0.67 1
Target:  5'- -cUUAACUCa--AGGcAUUAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGgauUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 89200 0.67 1
Target:  5'- uCUUUAACUCCUAAAGcAUa------- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAauaguuac -5'
28277 3' -36.1 NC_005902.1 + 77645 0.67 1
Target:  5'- gCUUUGGCUCauaaacaUAAAGUAgcugAUCAAa- -3'
miRNA:   3'- -GAAAUUGAGg------AUUUCAUaa--UAGUUac -5'
28277 3' -36.1 NC_005902.1 + 36556 0.67 1
Target:  5'- -cUUAAC-CCUAAGGgGUUAUCGu-- -3'
miRNA:   3'- gaAAUUGaGGAUUUCaUAAUAGUuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.