Results 1 - 20 of 211 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 82105 | 0.66 | 1 |
Target: 5'- uUUUAACUCCaugu-UGUUAUUGAUGa -3' miRNA: 3'- gAAAUUGAGGauuucAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 137561 | 0.66 | 1 |
Target: 5'- -aUUAACUCCacgc-UGUUAUCAAUa -3' miRNA: 3'- gaAAUUGAGGauuucAUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 73625 | 0.66 | 1 |
Target: 5'- cCUUUAACUCUUAA---GUUGUUGAUa -3' miRNA: 3'- -GAAAUUGAGGAUUucaUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 84067 | 0.66 | 1 |
Target: 5'- cCUUUAACUCUgcac-UAUcAUCAAUGg -3' miRNA: 3'- -GAAAUUGAGGauuucAUAaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 111037 | 0.66 | 1 |
Target: 5'- -gUUAACUUCUAAAaUAUcAUUAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUcAUAaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 167484 | 0.66 | 1 |
Target: 5'- uCUUUAAUUCUauac-UGUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGauuucAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 143929 | 0.66 | 1 |
Target: 5'- cCUUUAAUUCUUAAAacugaaagAUUGUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUca------UAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 125703 | 0.66 | 1 |
Target: 5'- gCUUUAACUUCacauc-AUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGauuucaUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 92085 | 0.66 | 1 |
Target: 5'- uUUUAACUCUgcgu-UGUUGUCAAUa -3' miRNA: 3'- gAAAUUGAGGauuucAUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 174933 | 0.66 | 1 |
Target: 5'- -aUUAACUCCUAAAa---UAUCAuUGa -3' miRNA: 3'- gaAAUUGAGGAUUUcauaAUAGUuAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 176189 | 0.66 | 1 |
Target: 5'- cCUUUAACUCUgcgc-UGUUAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGauuucAUAAUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 85654 | 0.66 | 1 |
Target: 5'- uUUUAACUUUUAuGGUAUcAUUGAUGa -3' miRNA: 3'- gAAAUUGAGGAUuUCAUAaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 26677 | 0.66 | 1 |
Target: 5'- -aUUAACUCCaugc-UGUUGUUAAUGa -3' miRNA: 3'- gaAAUUGAGGauuucAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 154904 | 0.66 | 1 |
Target: 5'- cCUUUAACUCCaaacaUcaucaauaacauGAAGUAUUGUUGAUa -3' miRNA: 3'- -GAAAUUGAGG-----A------------UUUCAUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 114794 | 0.66 | 1 |
Target: 5'- cCUUUAACUCUUAAAGc---AUCAc-- -3' miRNA: 3'- -GAAAUUGAGGAUUUCauaaUAGUuac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 8529 | 0.66 | 1 |
Target: 5'- -aUUAAUUCCUAAAGcuucAUUGAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 67674 | 0.67 | 1 |
Target: 5'- cCUUUAACUUCUAAGGc---AUCAuUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCauaaUAGUuAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 77645 | 0.67 | 1 |
Target: 5'- gCUUUGGCUCauaaacaUAAAGUAgcugAUCAAa- -3' miRNA: 3'- -GAAAUUGAGg------AUUUCAUaa--UAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 89200 | 0.67 | 1 |
Target: 5'- uCUUUAACUCCUAAAGcAUa------- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAauaguuac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 143953 | 0.67 | 1 |
Target: 5'- -cUUAACUCa--AGGcAUUAUCAAUGa -3' miRNA: 3'- gaAAUUGAGgauUUCaUAAUAGUUAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home