miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 48166 1.14 0.218375
Target:  5'- cCUUUAACUCCUAAAGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 110226 1.07 0.422718
Target:  5'- cCUUUAACUCCUAAGGUAUUAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 33259 1.03 0.600664
Target:  5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 33387 1.03 0.600664
Target:  5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 181205 1.02 0.62423
Target:  5'- cCUUUAACUCCUAAAGcGUUGUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 184446 1 0.729205
Target:  5'- cCUUUAACUCUUAAGGUGUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 51727 0.99 0.75166
Target:  5'- cCUUUAGCUUCUAAGGUAUUGUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 67824 0.97 0.815224
Target:  5'- uUUUAACUCCUAAAGcAUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 140108 0.97 0.825121
Target:  5'- aCUUUAACUCCUAAGaUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 53091 0.97 0.825121
Target:  5'- cCUUUAACUCUUAAGGUAUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 158167 0.97 0.834784
Target:  5'- cCUUUAAUUCCUAAAGUAUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 79007 0.96 0.862261
Target:  5'- cCUUUAACUCUUAAGGUGUUAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 162467 0.95 0.895002
Target:  5'- uUUUAAUUCCUAAGGUGUUGUUGAUGg -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 15804 0.94 0.909568
Target:  5'- cCUUUAACUCCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 167735 0.94 0.916383
Target:  5'- gCUUUAACUCCUAAGGcAUUAUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 80861 0.94 0.922881
Target:  5'- -aUUAACUUCUAAAGUGUUAUCAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 137845 0.93 0.934923
Target:  5'- cCUUUAACUCCUAAAGUAUcAUUGAUGu -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 141145 0.93 0.9457
Target:  5'- uUUUAAUUCCUAAGGUAUugUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUA--AUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 175940 0.93 0.9457
Target:  5'- cCUUUAACUCCUAAGGUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 81857 0.92 0.955232
Target:  5'- uCUUUAACUCCUAAGGcGUUAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.