miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 5314 0.91 0.96729
Target:  5'- uUUUAACUUCUAAGGUGUcGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 96288 0.91 0.973923
Target:  5'- cCUUUAACUCCUAAGGcAUUAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 67982 0.91 0.973923
Target:  5'- cCUUUAAUUCCUAAAGUAUcAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 51608 0.9 0.976846
Target:  5'- cCUUUAAUUCCUAAuGUGUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUuCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 180755 0.9 0.976846
Target:  5'- -cUUAAUUCCUAAGGUGUUAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 48416 0.9 0.984172
Target:  5'- cCUUUAGCUCCUAAGGcGUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 67424 0.87 0.996049
Target:  5'- uCUUUAACUCCUAAGGcauUGUUAUUGAUGc -3'
miRNA:   3'- -GAAAUUGAGGAUUUC---AUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81997 0.86 0.997262
Target:  5'- cCUUUAAaUCCUAAGGUGUUAUUggUGa -3'
miRNA:   3'- -GAAAUUgAGGAUUUCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 181707 0.86 0.997741
Target:  5'- cCUUUAACUUCUAAAGcAUUGUCGAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 148426 0.86 0.998148
Target:  5'- -aUUAAUUCCUAAGGUAUUGUUGAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 1315 0.86 0.998148
Target:  5'- -aUUAAUUCCUAAGGUGUUGUUGAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 26431 0.86 0.998148
Target:  5'- cCUUUAAUUUCUAAGGcAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 134275 0.85 0.998779
Target:  5'- uCUUUAACUCCUAAGGcauUAUUAaCAAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUC---AUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 91071 0.85 0.999019
Target:  5'- -cUUAACUCCUAAGGcAUUAUUGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 65589 0.85 0.999019
Target:  5'- --cUAACUCCUAAGGUGUUAaUAAUGu -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 67294 0.85 0.99938
Target:  5'- uCUUUAA-UCCUAAGGUGUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUgAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 106000 0.85 0.99938
Target:  5'- uCUUUAACUCCUAAGuUGUUcUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAuAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 82627 0.84 0.999476
Target:  5'- uUUUAACUCCUAAgauauuauugauguGGUGUUAUUGAUGa -3'
miRNA:   3'- gAAAUUGAGGAUU--------------UCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 94382 0.84 0.999513
Target:  5'- aUUUAACUCuuuaCUAAGGUAUUAUCAAUa -3'
miRNA:   3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 163811 0.84 0.999513
Target:  5'- -cUUAACUCCUAAAGUGUcAUUAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.