Results 21 - 40 of 211 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 26324 | 0.83 | 0.999775 |
Target: 5'- -aUUAACUCCUAAGGcAUcAUCAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 94382 | 0.84 | 0.999513 |
Target: 5'- aUUUAACUCuuuaCUAAGGUAUUAUCAAUa -3' miRNA: 3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 67982 | 0.91 | 0.973923 |
Target: 5'- cCUUUAAUUCCUAAAGUAUcAUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 67824 | 0.97 | 0.815224 |
Target: 5'- uUUUAACUCCUAAAGcAUUGUCAAUGa -3' miRNA: 3'- gAAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 58329 | 0.79 | 0.999999 |
Target: 5'- gUUUAACUCCcAAGGcGUUAUCAAUa -3' miRNA: 3'- gAAAUUGAGGaUUUCaUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 90491 | 0.81 | 0.999981 |
Target: 5'- cCUUUAACUCUUAAGGcAUcAUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 91071 | 0.85 | 0.999019 |
Target: 5'- -cUUAACUCCUAAGGcAUUAUUGAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 184446 | 1 | 0.729205 |
Target: 5'- cCUUUAACUCUUAAGGUGUUGUUAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 15931 | 0.81 | 0.999973 |
Target: 5'- cCUUUAAUUCCUGGGGUAUcAUUAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 33259 | 1.03 | 0.600664 |
Target: 5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 106000 | 0.85 | 0.99938 |
Target: 5'- uCUUUAACUCCUAAGuUGUUcUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUcAUAAuAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 49984 | 0.83 | 0.999775 |
Target: 5'- cCUUUAACUCCUAAGGcAUcAUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 1315 | 0.86 | 0.998148 |
Target: 5'- -aUUAAUUCCUAAGGUGUUGUUGAUa -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 180755 | 0.9 | 0.976846 |
Target: 5'- -cUUAAUUCCUAAGGUGUUAUCAAc- -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAAUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 175940 | 0.93 | 0.9457 |
Target: 5'- cCUUUAACUCCUAAGGUAUcAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 162467 | 0.95 | 0.895002 |
Target: 5'- uUUUAAUUCCUAAGGUGUUGUUGAUGg -3' miRNA: 3'- gAAAUUGAGGAUUUCAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 82187 | 0.78 | 1 |
Target: 5'- cCUUUAACUCCaUAu--UGUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGG-AUuucAUAAUAGUUAC- -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 67193 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACUCCUAAGGc---AUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCauaaUAGUUAc -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 98704 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACUCUUAAGGUGUcAUUAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5' |
|||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 16806 | 0.81 | 0.999986 |
Target: 5'- cCUUUAACUCCUAAGGcAUcAUUGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home