miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 48166 1.14 0.218375
Target:  5'- cCUUUAACUCCUAAAGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 75755 0.8 0.999996
Target:  5'- -cUUAACUCCUAAAGcaccAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCauaaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 39019 0.8 0.999996
Target:  5'- -aUUAACUUCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 110170 0.84 0.999513
Target:  5'- cCUUUAAUUCCUAAGGcAUUGUCAGa- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 81997 0.86 0.997262
Target:  5'- cCUUUAAaUCCUAAGGUGUUAUUggUGa -3'
miRNA:   3'- -GAAAUUgAGGAUUUCAUAAUAGuuAC- -5'
28277 3' -36.1 NC_005902.1 + 161949 0.79 0.999999
Target:  5'- aCUUUAACUCCUAAGGcAUcGUUAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 169669 0.79 0.999999
Target:  5'- uUUUAACUCUUAAGGcGUcAUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 81857 0.92 0.955232
Target:  5'- uCUUUAACUCCUAAGGcGUUAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 8346 0.82 0.999929
Target:  5'- -cUUAACUCCUAAAacAUUGUCGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26324 0.83 0.999775
Target:  5'- -aUUAACUCCUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 80861 0.94 0.922881
Target:  5'- -aUUAACUUCUAAAGUGUUAUCAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 15804 0.94 0.909568
Target:  5'- cCUUUAACUCCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 84999 0.78 1
Target:  5'- -gUUAAUUCCUAAAGcAUUGUgGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAgUUAC- -5'
28277 3' -36.1 NC_005902.1 + 165881 0.78 1
Target:  5'- cCUUUAACUUCUAAGGUGUcAUUAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 16806 0.81 0.999986
Target:  5'- cCUUUAACUCCUAAGGcAUcAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 134275 0.85 0.998779
Target:  5'- uCUUUAACUCCUAAGGcauUAUUAaCAAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUC---AUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26431 0.86 0.998148
Target:  5'- cCUUUAAUUUCUAAGGcAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 162467 0.95 0.895002
Target:  5'- uUUUAAUUCCUAAGGUGUUGUUGAUGg -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 25070 0.84 0.999706
Target:  5'- cCUUUAACUCCUAAAGcGUUGUUGAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 95877 0.81 0.999973
Target:  5'- --cUAACUCCUAAGGcAUUAUCAAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCaUAAUAGUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.