miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 48166 1.14 0.218375
Target:  5'- cCUUUAACUCCUAAAGUAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 91071 0.85 0.999019
Target:  5'- -cUUAACUCCUAAGGcAUUAUUGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 94382 0.84 0.999513
Target:  5'- aUUUAACUCuuuaCUAAGGUAUUAUCAAUa -3'
miRNA:   3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 174933 0.66 1
Target:  5'- -aUUAACUCCUAAAa---UAUCAuUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcauaAUAGUuAC- -5'
28277 3' -36.1 NC_005902.1 + 162467 0.95 0.895002
Target:  5'- uUUUAAUUCCUAAGGUGUUGUUGAUGg -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 15804 0.94 0.909568
Target:  5'- cCUUUAACUCCUAAGGcAUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 175940 0.93 0.9457
Target:  5'- cCUUUAACUCCUAAGGUAUcAUCAAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 81857 0.92 0.955232
Target:  5'- uCUUUAACUCCUAAGGcGUUAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 180755 0.9 0.976846
Target:  5'- -cUUAAUUCCUAAGGUGUUAUCAAc- -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 65589 0.85 0.999019
Target:  5'- --cUAACUCCUAAGGUGUUAaUAAUGu -3'
miRNA:   3'- gaaAUUGAGGAUUUCAUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 26431 0.86 0.998148
Target:  5'- cCUUUAAUUUCUAAGGcAUUAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 67982 0.91 0.973923
Target:  5'- cCUUUAAUUCCUAAAGUAUcAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 33259 1.03 0.600664
Target:  5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 1315 0.86 0.998148
Target:  5'- -aUUAAUUCCUAAGGUGUUGUUGAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 184446 1 0.729205
Target:  5'- cCUUUAACUCUUAAGGUGUUGUUAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 5314 0.91 0.96729
Target:  5'- uUUUAACUUCUAAGGUGUcGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 134275 0.85 0.998779
Target:  5'- uCUUUAACUCCUAAGGcauUAUUAaCAAUGg -3'
miRNA:   3'- -GAAAUUGAGGAUUUC---AUAAUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 106000 0.85 0.99938
Target:  5'- uCUUUAACUCCUAAGuUGUUcUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUcAUAAuAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 67824 0.97 0.815224
Target:  5'- uUUUAACUCCUAAAGcAUUGUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 80861 0.94 0.922881
Target:  5'- -aUUAACUUCUAAAGUGUUAUCAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.