Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 48166 | 1.14 | 0.218375 |
Target: 5'- cCUUUAACUCCUAAAGUAUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 110226 | 1.07 | 0.422718 |
Target: 5'- cCUUUAACUCCUAAGGUAUUAUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 33387 | 1.03 | 0.600664 |
Target: 5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 33259 | 1.03 | 0.600664 |
Target: 5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 181205 | 1.02 | 0.62423 |
Target: 5'- cCUUUAACUCCUAAAGcGUUGUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 184446 | 1 | 0.729205 |
Target: 5'- cCUUUAACUCUUAAGGUGUUGUUAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 51727 | 0.99 | 0.75166 |
Target: 5'- cCUUUAGCUUCUAAGGUAUUGUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 53091 | 0.97 | 0.825121 |
Target: 5'- cCUUUAACUCUUAAGGUAUUGUUGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 158167 | 0.97 | 0.834784 |
Target: 5'- cCUUUAAUUCCUAAAGUAUcAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 140108 | 0.97 | 0.825121 |
Target: 5'- aCUUUAACUCCUAAGaUAUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUcAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 67824 | 0.97 | 0.815224 |
Target: 5'- uUUUAACUCCUAAAGcAUUGUCAAUGa -3' miRNA: 3'- gAAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 79007 | 0.96 | 0.862261 |
Target: 5'- cCUUUAACUCUUAAGGUGUUAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 162467 | 0.95 | 0.895002 |
Target: 5'- uUUUAAUUCCUAAGGUGUUGUUGAUGg -3' miRNA: 3'- gAAAUUGAGGAUUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 167735 | 0.94 | 0.916383 |
Target: 5'- gCUUUAACUCCUAAGGcAUUAUUAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 80861 | 0.94 | 0.922881 |
Target: 5'- -aUUAACUUCUAAAGUGUUAUCAAUa -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 15804 | 0.94 | 0.909568 |
Target: 5'- cCUUUAACUCCUAAGGcAUUGUUAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 141145 | 0.93 | 0.9457 |
Target: 5'- uUUUAAUUCCUAAGGUAUugUGUCAAUGa -3' miRNA: 3'- gAAAUUGAGGAUUUCAUA--AUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 137845 | 0.93 | 0.934923 |
Target: 5'- cCUUUAACUCCUAAAGUAUcAUUGAUGu -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 175940 | 0.93 | 0.9457 |
Target: 5'- cCUUUAACUCCUAAGGUAUcAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 81857 | 0.92 | 0.955232 |
Target: 5'- uCUUUAACUCCUAAGGcGUUAUUGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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