Results 41 - 60 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 3' | -36.1 | NC_005902.1 | + | 136731 | 0.79 | 0.999999 |
Target: 5'- uCUUUAACUCCauguugucauUGAcaaugcuuAGUGUUGUCAAUGa -3' miRNA: 3'- -GAAAUUGAGG----------AUU--------UCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 91071 | 0.85 | 0.999019 |
Target: 5'- -cUUAACUCCUAAGGcAUUAUUGAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 184446 | 1 | 0.729205 |
Target: 5'- cCUUUAACUCUUAAGGUGUUGUUAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 169669 | 0.79 | 0.999999 |
Target: 5'- uUUUAACUCUUAAGGcGUcAUCAAUGa -3' miRNA: 3'- gAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 33259 | 1.03 | 0.600664 |
Target: 5'- uCUUUAACUCCUAAAGUAUcGUCGAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 93292 | 0.75 | 1 |
Target: 5'- uCUUUAACUUUUAAAGcAUcAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 162467 | 0.95 | 0.895002 |
Target: 5'- uUUUAAUUCCUAAGGUGUUGUUGAUGg -3' miRNA: 3'- gAAAUUGAGGAUUUCAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 154657 | 0.76 | 1 |
Target: 5'- cCUUUAACUUUUAAGGcAUUAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 50416 | 0.76 | 1 |
Target: 5'- -gUUAAUUCCUAAGGcAUcAUCGAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 130997 | 0.77 | 1 |
Target: 5'- --gUAACUUCUAAAGUAUcAUCAAc- -3' miRNA: 3'- gaaAUUGAGGAUUUCAUAaUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 97240 | 0.78 | 1 |
Target: 5'- cCUUcAAUUCUUAAGGUAUcAUCAAUGa -3' miRNA: 3'- -GAAaUUGAGGAUUUCAUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 82187 | 0.78 | 1 |
Target: 5'- cCUUUAACUCCaUAu--UGUUAUCAAUGa -3' miRNA: 3'- -GAAAUUGAGG-AUuucAUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 67193 | 0.79 | 0.999999 |
Target: 5'- cCUUUAACUCCUAAGGc---AUCAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCauaaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 39019 | 0.8 | 0.999996 |
Target: 5'- -aUUAACUUCUAAGGcAUUGUUAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAAUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 15931 | 0.81 | 0.999973 |
Target: 5'- cCUUUAAUUCCUGGGGUAUcAUUAAUa -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 26324 | 0.83 | 0.999775 |
Target: 5'- -aUUAACUCCUAAGGcAUcAUCAAUGa -3' miRNA: 3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 94382 | 0.84 | 0.999513 |
Target: 5'- aUUUAACUCuuuaCUAAGGUAUUAUCAAUa -3' miRNA: 3'- gAAAUUGAG----GAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 1315 | 0.86 | 0.998148 |
Target: 5'- -aUUAAUUCCUAAGGUGUUGUUGAUa -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAAUAGUUAc -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 180755 | 0.9 | 0.976846 |
Target: 5'- -cUUAAUUCCUAAGGUGUUAUCAAc- -3' miRNA: 3'- gaAAUUGAGGAUUUCAUAAUAGUUac -5' |
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28277 | 3' | -36.1 | NC_005902.1 | + | 175940 | 0.93 | 0.9457 |
Target: 5'- cCUUUAACUCCUAAGGUAUcAUCAAc- -3' miRNA: 3'- -GAAAUUGAGGAUUUCAUAaUAGUUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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