miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 78792 0.73 0.786562
Target:  5'- uAUCGUUGAUGAUGUCUUAaGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 82072 0.76 0.631486
Target:  5'- cAUCAUCaAUaACGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 83832 0.67 0.982288
Target:  5'- --uGUUGAUGAUaUCUUAGGAGUUAAa -3'
miRNA:   3'- uagUAGCUACUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 85339 0.66 0.991793
Target:  5'- cAUUAUUGAUGACGCau--GGAGUUu- -3'
miRNA:   3'- -UAGUAGCUACUGCGgaauCCUCGAuu -5'
28277 5' -51.2 NC_005902.1 + 90507 0.73 0.823599
Target:  5'- cAUCAUCGAUGACGaugu-GGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCggaauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 90705 0.84 0.261304
Target:  5'- cGUCAUCGAUGAUGCCUUAaGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 91284 0.73 0.814602
Target:  5'- cAUCAUCaAUaAUGCCUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGcUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 91963 0.67 0.975188
Target:  5'- uGUCAUUGAUGAUGUCUUAaaGGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUccUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 93506 0.67 0.980117
Target:  5'- cAUCAUUGAUGAUGCUUUAaaAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUccUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 96073 0.74 0.736931
Target:  5'- uGUUGUUGAUaAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 96089 0.74 0.767093
Target:  5'- uGUUGUUGAUaAUGCCUUAGGAGUUAGa -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 99695 0.77 0.578164
Target:  5'- cAUUGUUGAUGACGCCUUAGGAaUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 100357 0.67 0.975188
Target:  5'- uGUCAUCaAUGAUGCCUUAaGAGUa-- -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUcCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 104151 0.66 0.991793
Target:  5'- uAUCAUCaAUGAUGCUUUaagaauuaaAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAA---------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 104298 0.68 0.972414
Target:  5'- cAUCAUUGAUGACGgUgugaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCgGaa------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 104496 0.72 0.841013
Target:  5'- cGUCAUCaAUGAUGCCUUAaGAGUUAAc -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 106108 0.77 0.610095
Target:  5'- -gCAUUaAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 113948 0.66 0.992878
Target:  5'- uGUUAaUGAUGcUGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUaGCUACuGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 114956 0.79 0.475478
Target:  5'- uAUUAUCaAUGAUGCCUUGGGAGUUAGg -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 116975 0.74 0.736931
Target:  5'- uGUCGUCaAUGAUGUUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.