miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 33474 0.72 0.86556
Target:  5'- uGUCAUCGAcGAUaCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUaCUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 37354 0.97 0.044684
Target:  5'- cGUCAUCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 37552 0.67 0.981008
Target:  5'- cAUC-UCGAUGACGCCUUguguuauugaugacaAcauGGAGUUAAa -3'
miRNA:   3'- -UAGuAGCUACUGCGGAA---------------U---CCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 43805 0.69 0.950974
Target:  5'- uGUUAUCGAUGACaUUUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGCUACUGcGGAAUCCUCGAuu -5'
28277 5' -51.2 NC_005902.1 + 48201 1.04 0.01502
Target:  5'- uAUCAUCGAUGACGCCUUAGGAGCUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 48254 0.68 0.972414
Target:  5'- ----cUGAcGAUGCCUUAGGAGUUAu -3'
miRNA:   3'- uaguaGCUaCUGCGGAAUCCUCGAUu -5'
28277 5' -51.2 NC_005902.1 + 48400 0.67 0.983699
Target:  5'- cGUCAUCGAUGAUacaaaGCaucauugauaauacUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUG-----CG--------------GAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 50199 0.88 0.159925
Target:  5'- cAUUAUUGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 50628 0.84 0.274586
Target:  5'- uGUCAUCGAUGAUGCCUUAGGAaUUAAc -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 55208 0.76 0.652879
Target:  5'- uGUUAUUaAUGAUGCCUUAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 57440 0.66 0.991793
Target:  5'- uUCAgUCGGUGAauuaGCCaUAGGAGUa-- -3'
miRNA:   3'- uAGU-AGCUACUg---CGGaAUCCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 58362 0.68 0.972414
Target:  5'- -gUAUUGAUGACGCau--GGAGUUAAa -3'
miRNA:   3'- uaGUAGCUACUGCGgaauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 58542 0.79 0.475478
Target:  5'- uGUUAUUGAUaACGCCUUGGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 61550 0.7 0.920536
Target:  5'- -gCAUCGuUGACaauGCCUUAGGAGUg-- -3'
miRNA:   3'- uaGUAGCuACUG---CGGAAUCCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 66970 0.7 0.908307
Target:  5'- cAUCGUUGAUGAUGUgU--GGAGCUAAu -3'
miRNA:   3'- -UAGUAGCUACUGCGgAauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 67409 0.77 0.610095
Target:  5'- -gCAUUGuuauUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGCu---ACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 68037 0.7 0.908307
Target:  5'- uGUCAUUGAcaAUGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 68096 0.73 0.805424
Target:  5'- uAUUAUCGAUGAUGCCUUAaGAGUc-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 71895 0.77 0.599423
Target:  5'- cAUCAUCaAUGACGUgUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGcUACUGCGgAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 75967 0.8 0.41837
Target:  5'- uGUCAUUGAUGGUGCUUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.