miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 8559 0.7 0.931722
Target:  5'- uGUCAUCGAcaAUGUUUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 10493 0.68 0.972414
Target:  5'- cAUUAUCGAUaAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 10671 0.73 0.805424
Target:  5'- -gUAUCGAUGAUGCau--GGAGCUAAa -3'
miRNA:   3'- uaGUAGCUACUGCGgaauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 11211 0.8 0.43695
Target:  5'- uGUCAUUGAUGAUGCCUUAaGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 11282 0.85 0.24855
Target:  5'- uAUCAUCaAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 16032 0.69 0.940409
Target:  5'- uAUCAaUGAUGGggcaucauuaacaaUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUaGCUACU--------------GCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 16090 0.74 0.767093
Target:  5'- -gCAUUGuuaauaAUGAUGCCUUAGGAGUUAAu -3'
miRNA:   3'- uaGUAGC------UACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 17020 0.85 0.230388
Target:  5'- uGUCAUCaAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 20090 0.68 0.972414
Target:  5'- uGUCAUCGAUGACauGagUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGCUACUG--CggAAUCCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 20200 0.8 0.41837
Target:  5'- uGUUAUCaAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 20435 0.8 0.43695
Target:  5'- cAUUAUCaAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 20458 0.69 0.946547
Target:  5'- uGUCGUUGAUGcUGCCUUAaGAGUUAAc -3'
miRNA:   3'- -UAGUAGCUACuGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 25285 0.67 0.975188
Target:  5'- uAUCGUCaacaACGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcuacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 26422 0.84 0.267879
Target:  5'- cAUCGUCaAUGAUGCCUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 26537 0.92 0.085386
Target:  5'- cGUCAUUGAUGAUGCCUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 27634 0.87 0.192347
Target:  5'- cAUCggCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 27945 0.87 0.192347
Target:  5'- cAUCggCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 28725 0.69 0.941864
Target:  5'- aGUCAUaGAUGAUGCCUUagauuaAGGAGUa-- -3'
miRNA:   3'- -UAGUAgCUACUGCGGAA------UCCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 33057 0.66 0.989233
Target:  5'- gAUCAUCGAUGAUaCCUU--GAGUUAAu -3'
miRNA:   3'- -UAGUAGCUACUGcGGAAucCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 33172 0.72 0.86556
Target:  5'- uGUCAUCGAcGAUaCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUaCUGcGGAAUCCUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.