miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 48201 1.04 0.01502
Target:  5'- uAUCAUCGAUGACGCCUUAGGAGCUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 37354 0.97 0.044684
Target:  5'- cGUCAUCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 26537 0.92 0.085386
Target:  5'- cGUCAUUGAUGAUGCCUUAGGAGUUAAu -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 50199 0.88 0.159925
Target:  5'- cAUUAUUGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 27945 0.87 0.192347
Target:  5'- cAUCggCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 27634 0.87 0.192347
Target:  5'- cAUCggCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 17020 0.85 0.230388
Target:  5'- uGUCAUCaAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 11282 0.85 0.24855
Target:  5'- uAUCAUCaAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 90705 0.84 0.261304
Target:  5'- cGUCAUCGAUGAUGCCUUAaGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 149286 0.84 0.261304
Target:  5'- cAUCAUCGAUGAUGCCUUAGGAuuUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcgAUU- -5'
28277 5' -51.2 NC_005902.1 + 142118 0.84 0.267879
Target:  5'- uGUCAUCGAUGAUGCUUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCuCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 26422 0.84 0.267879
Target:  5'- cAUCGUCaAUGAUGCCUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 50628 0.84 0.274586
Target:  5'- uGUCAUCGAUGAUGCCUUAGGAaUUAAc -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 169883 0.83 0.288404
Target:  5'- uGUCAUUGAUGACGCCUUAaGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 131027 0.83 0.317664
Target:  5'- uGUUAUCGAUGACGCCUUAGaAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCcUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 139848 0.82 0.365632
Target:  5'- cAUCAUUGAUGACGCCaugagUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGCUACUGCGG-----AAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 20200 0.8 0.41837
Target:  5'- uGUUAUCaAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 75967 0.8 0.41837
Target:  5'- uGUCAUUGAUGGUGCUUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 20435 0.8 0.43695
Target:  5'- cAUUAUCaAUGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 11211 0.8 0.43695
Target:  5'- uGUCAUUGAUGAUGCCUUAaGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.