Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28277 | 5' | -51.2 | NC_005902.1 | + | 156497 | 0.8 | 0.455995 |
Target: 5'- cAUCAUUGAUGAUGCCUUAaGAGUUAAa -3' miRNA: 3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 58542 | 0.79 | 0.475478 |
Target: 5'- uGUUAUUGAUaACGCCUUGGGAGUUAAa -3' miRNA: 3'- -UAGUAGCUAcUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 114956 | 0.79 | 0.475478 |
Target: 5'- uAUUAUCaAUGAUGCCUUGGGAGUUAGg -3' miRNA: 3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 149173 | 0.78 | 0.557074 |
Target: 5'- cAUCAUCGAUGACaUUUUAGGAGUUAAu -3' miRNA: 3'- -UAGUAGCUACUGcGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 99695 | 0.77 | 0.578164 |
Target: 5'- cAUUGUUGAUGACGCCUUAGGAaUUAAa -3' miRNA: 3'- -UAGUAGCUACUGCGGAAUCCUcGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 71895 | 0.77 | 0.599423 |
Target: 5'- cAUCAUCaAUGACGUgUUAGGAGUUAAg -3' miRNA: 3'- -UAGUAGcUACUGCGgAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 106108 | 0.77 | 0.610095 |
Target: 5'- -gCAUUaAUGAUGCCUUAGGAGUUAAa -3' miRNA: 3'- uaGUAGcUACUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 172698 | 0.77 | 0.610095 |
Target: 5'- uGUUGUCaAUGAUGCCUUAGGGGUUAAc -3' miRNA: 3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 67409 | 0.77 | 0.610095 |
Target: 5'- -gCAUUGuuauUGAUGCCUUAGGAGUUAAa -3' miRNA: 3'- uaGUAGCu---ACUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 82072 | 0.76 | 0.631486 |
Target: 5'- cAUCAUCaAUaACGCCUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGcUAcUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 55208 | 0.76 | 0.652879 |
Target: 5'- uGUUAUUaAUGAUGCCUUAGGGGUUAAa -3' miRNA: 3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 176155 | 0.74 | 0.726664 |
Target: 5'- cAUUGUUGAUGAUaCCUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGCUACUGcGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 116975 | 0.74 | 0.736931 |
Target: 5'- uGUCGUCaAUGAUGUUUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 96073 | 0.74 | 0.736931 |
Target: 5'- uGUUGUUGAUaAUGCCUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGCUAcUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 16090 | 0.74 | 0.767093 |
Target: 5'- -gCAUUGuuaauaAUGAUGCCUUAGGAGUUAAu -3' miRNA: 3'- uaGUAGC------UACUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 122867 | 0.74 | 0.767093 |
Target: 5'- cAUUGUUGAUGAUGCCUUAGGAaUUAAa -3' miRNA: 3'- -UAGUAGCUACUGCGGAAUCCUcGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 96089 | 0.74 | 0.767093 |
Target: 5'- uGUUGUUGAUaAUGCCUUAGGAGUUAGa -3' miRNA: 3'- -UAGUAGCUAcUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 180990 | 0.73 | 0.786562 |
Target: 5'- uAUCAUUGAcaACGCUUUAGGAGUUAAa -3' miRNA: 3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 78792 | 0.73 | 0.786562 |
Target: 5'- uAUCGUUGAUGAUGUCUUAaGAGUUAAg -3' miRNA: 3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5' |
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28277 | 5' | -51.2 | NC_005902.1 | + | 144125 | 0.73 | 0.796074 |
Target: 5'- uAUCAU---UGAUGCCUUAGGAGUUAAc -3' miRNA: 3'- -UAGUAgcuACUGCGGAAUCCUCGAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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