miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 33172 0.72 0.86556
Target:  5'- uGUCAUCGAcGAUaCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUaCUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 149286 0.84 0.261304
Target:  5'- cAUCAUCGAUGAUGCCUUAGGAuuUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcgAUU- -5'
28277 5' -51.2 NC_005902.1 + 143560 0.67 0.977753
Target:  5'- cAUCAUUGucaAUGACaUCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAGC---UACUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 20090 0.68 0.972414
Target:  5'- uGUCAUCGAUGACauGagUUAGGAGUa-- -3'
miRNA:   3'- -UAGUAGCUACUG--CggAAUCCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 144125 0.73 0.796074
Target:  5'- uAUCAU---UGAUGCCUUAGGAGUUAAc -3'
miRNA:   3'- -UAGUAgcuACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 27634 0.87 0.192347
Target:  5'- cAUCggCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGuaGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 20458 0.69 0.946547
Target:  5'- uGUCGUUGAUGcUGCCUUAaGAGUUAAc -3'
miRNA:   3'- -UAGUAGCUACuGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 37354 0.97 0.044684
Target:  5'- cGUCAUCGAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 48201 1.04 0.01502
Target:  5'- uAUCAUCGAUGACGCCUUAGGAGCUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 99695 0.77 0.578164
Target:  5'- cAUUGUUGAUGACGCCUUAGGAaUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 90507 0.73 0.823599
Target:  5'- cAUCAUCGAUGACGaugu-GGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCggaauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 118539 0.7 0.931722
Target:  5'- uAUCAUCGAUGAUGCCUUAaagauuaaaGAGUa-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUc--------CUCGauu -5'
28277 5' -51.2 NC_005902.1 + 16090 0.74 0.767093
Target:  5'- -gCAUUGuuaauaAUGAUGCCUUAGGAGUUAAu -3'
miRNA:   3'- uaGUAGC------UACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 106108 0.77 0.610095
Target:  5'- -gCAUUaAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 11211 0.8 0.43695
Target:  5'- uGUCAUUGAUGAUGCCUUAaGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 142118 0.84 0.267879
Target:  5'- uGUCAUCGAUGAUGCUUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCuCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 142075 0.66 0.991793
Target:  5'- uGUUAUUGAUGAUGCCUUcGaAGUUAAc -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAuCcUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 83832 0.67 0.982288
Target:  5'- --uGUUGAUGAUaUCUUAGGAGUUAAa -3'
miRNA:   3'- uagUAGCUACUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 58362 0.68 0.972414
Target:  5'- -gUAUUGAUGACGCau--GGAGUUAAa -3'
miRNA:   3'- uaGUAGCUACUGCGgaauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 104298 0.68 0.972414
Target:  5'- cAUCAUUGAUGACGgUgugaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCgGaa------UCCUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.