miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 104298 0.68 0.972414
Target:  5'- cAUCAUUGAUGACGgUgugaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCgGaa------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 143742 0.68 0.972414
Target:  5'- uGUCAUUGAUaAUGCCUUgaguuaAGGGGUUAAg -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAA------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 58362 0.68 0.972414
Target:  5'- -gUAUUGAUGACGCau--GGAGUUAAa -3'
miRNA:   3'- uaGUAGCUACUGCGgaauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 48254 0.68 0.972414
Target:  5'- ----cUGAcGAUGCCUUAGGAGUUAu -3'
miRNA:   3'- uaguaGCUaCUGCGGAAUCCUCGAUu -5'
28277 5' -51.2 NC_005902.1 + 149246 0.68 0.969423
Target:  5'- cAUCAUUGAUGAUGCCUUAGa------ -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCcucgauu -5'
28277 5' -51.2 NC_005902.1 + 122823 0.68 0.959076
Target:  5'- cAUCAUCGAUGAUGCUUUguguuguuaAGGAuGCc-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAA---------UCCU-CGauu -5'
28277 5' -51.2 NC_005902.1 + 161990 0.69 0.955149
Target:  5'- uAUCAUCaAUGACaCCUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGcGGAAUCCuCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 167521 0.69 0.936923
Target:  5'- cAUCAUUaAUaAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 20458 0.69 0.946547
Target:  5'- uGUCGUUGAUGcUGCCUUAaGAGUUAAc -3'
miRNA:   3'- -UAGUAGCUACuGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 28725 0.69 0.941864
Target:  5'- aGUCAUaGAUGAUGCCUUagauuaAGGAGUa-- -3'
miRNA:   3'- -UAGUAgCUACUGCGGAA------UCCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 43805 0.69 0.950974
Target:  5'- uGUUAUCGAUGACaUUUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGCUACUGcGGAAUCCUCGAuu -5'
28277 5' -51.2 NC_005902.1 + 168526 0.69 0.950974
Target:  5'- -aCGUugCGAUGAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- uaGUA--GCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 16032 0.69 0.940409
Target:  5'- uAUCAaUGAUGGggcaucauuaacaaUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUaGCUACU--------------GCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 162164 0.69 0.936923
Target:  5'- uGUUAUUaacGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcuaCUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 118539 0.7 0.931722
Target:  5'- uAUCAUCGAUGAUGCCUUAaagauuaaaGAGUa-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUc--------CUCGauu -5'
28277 5' -51.2 NC_005902.1 + 61550 0.7 0.920536
Target:  5'- -gCAUCGuUGACaauGCCUUAGGAGUg-- -3'
miRNA:   3'- uaGUAGCuACUG---CGGAAUCCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 66970 0.7 0.908307
Target:  5'- cAUCGUUGAUGAUGUgU--GGAGCUAAu -3'
miRNA:   3'- -UAGUAGCUACUGCGgAauCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 174700 0.7 0.914551
Target:  5'- cGUUAUUGAUGAUGUCUUAaGAGUUAAu -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 8559 0.7 0.931722
Target:  5'- uGUCAUCGAcaAUGUUUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 68037 0.7 0.908307
Target:  5'- uGUCAUUGAcaAUGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.